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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwMethenol_C1
Anticodon = CAG
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.115489 (2 seq.)
>WENV181166312
OEIU01000072
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
28633
28717
+
Leu
CAG
[ENA]
¢þ
>ENV09001019
ABSQ01016808
Freshwater sediment metagenome lwMethenol_C1
148
231
+
Leu
CAG
[ENA]
¡û
Identical group No.128102 (3 seq.)
>WENV181384360
OFRI01000337
[OFRI] wastewater metagenome; Exp Tend VB 90WW
970
884
-
Leu
CAG
[ENA]
¢þ
>WENV181399154
OFSE01012290
[OFSE] wastewater metagenome; Exp Tend VB 50WW
1379
1465
+
Leu
CAG
[ENA]
¢þ
>ENV09001188
ABSQ01045220
Freshwater sediment metagenome lwMethenol_C1
650
736
+
Leu
CAG
[ENA]
¡û
Identical group No.143243 (1 seq.)
>ENV09001174
ABSQ01043402
Freshwater sediment metagenome lwMethenol_C1
790
876
+
Leu
CAG
[ENA]
¡û
Identical group No.170121 (4 seq.)
>WENV180254684
OBEQ010653314
[OBEQ] groundwater metagenome; groundwater
1125
1210
+
Leu
CAG
[ENA]
¢þ
>WENV183686187
ORMF010962841
[ORMF] groundwater metagenome; groundwater
276
361
+
Leu
CAG
[ENA]
¢þ
>WENV170649007
JRHI01004931
[JRHI] sediment metagenome; sediment from deep within a dark volcanic ice cave with no known source of introduced
3035
2950
-
Leu
CAG
[ENA]
¢þ
>ENV09001147
ABSQ01039073
Freshwater sediment metagenome lwMethenol_C1
227
312
+
Leu
CAG
[ENA]
¡û
Identical group No.173202 (1 seq.)
>ENV09001095
ABSQ01031599
Freshwater sediment metagenome lwMethenol_C1
274
357
+
Leu
CAG
[ENA]
¡û
Identical group No.173205 (1 seq.)
>ENV09001138
ABSQ01037261
Freshwater sediment metagenome lwMethenol_C1
541
626
+
Leu
CAG
[ENA]
¡û
Identical group No.182495 (37 seq.)
>W1710860992
LMDI01000001
Betaproteobacteria
Rhizobacter sp. Root1221 [LMDI]
267508
267424
-
Leu
CAG
[ENA]
¡û
>W1710893683
LNEZ01000095
Alphaproteobacteria
Rhizobiales bacterium Ga0077548 [LNEZ]
21703
21787
+
Leu
CAG
[ENA]
¡û
>W131178093
ARLH01000086
Betaproteobacteria
Caldimonas manganoxidans ATCC BAA-369 [ARLH]
35742
35826
+
Leu
CAG
[ENA]
¡û
>WENV180022998
FTHB01000478
[FTHB] metagenome; soil
15648
15564
-
Leu
CAG
[ENA]
¢þ
>WENV180035625
FTLA01108396
[FTLA] metagenome; soil
557
641
+
Leu
CAG
[ENA]
¢þ
>WENV180311754
OBJT01540706
[OBJT] soil metagenome; soil
110
194
+
Leu
CAG
[ENA]
¢þ
>WENV180351377
OBLQ010050668
[OBLQ] soil metagenome; soil
773
857
+
Leu
CAG
[ENA]
¢þ
>WENV181144918
OEHO01133311
[OEHO] metagenome; unknown
165
81
-
Leu
CAG
[ENA]
¢þ
>WENV181311170
OFJB01000115
[OFJB] sludge metagenome; sludge
17290
17374
+
Leu
CAG
[ENA]
¢þ
>WENV181368006
OFQE01001449
[OFQE] freshwater metagenome; Freshwater Lake
199
283
+
Leu
CAG
[ENA]
¢þ
>WENV181401751
OFTX01004797
[OFTX] sludge metagenome; sludge
169
85
-
Leu
CAG
[ENA]
¢þ
>WENV181414558
OGCL01000649
[OGCL] hot springs metagenome; Hot spring water
13854
13938
+
Leu
CAG
[ENA]
¢þ
>WENV183680997
ORMF010249252
[ORMF] groundwater metagenome; groundwater
489
405
-
Leu
CAG
[ENA]
¢þ
>WENV183693444
ORMF012081210
[ORMF] groundwater metagenome; groundwater
2975
3059
+
Leu
CAG
[ENA]
¢þ
>WENV183702897
PDVJ01000641
[PDVJ] alkali sediment metagenome; glacial lake sediment
5339
5423
+
Leu
CAG
[ENA]
¢þ
>WENV183703413
PDVJ01012932
[PDVJ] alkali sediment metagenome; glacial lake sediment
90
6
-
Leu
CAG
[ENA]
¢þ
>WENV183703707
PDVJ01037078
[PDVJ] alkali sediment metagenome; glacial lake sediment
5
89
+
Leu
CAG
[ENA]
¢þ
>WENV183703834
PDVJ01051666
[PDVJ] alkali sediment metagenome; glacial lake sediment
626
542
-
Leu
CAG
[ENA]
¢þ
>WENV170002991
AGTN01188020
[AGTN] bioreactor metagenome; poplar biomass
341
257
-
Leu
CAG
[ENA]
¢þ
>WENV170558868
CXWL01096669
[CXWL] groundwater metagenome; biofilm material
672
756
+
Leu
CAG
[ENA]
¢þ
>WENV170586206
FUFK010377493
[FUFK] metagenome; unknown
361
445
+
Leu
CAG
[ENA]
¢þ
>WENV170709836
LNFM01000790
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
10977
10893
-
Leu
CAG
[ENA]
¢þ
>WENV170712034
LNFM01009304
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
8255
8171
-
Leu
CAG
[ENA]
¢þ
>WENV170974630
MTKY01068776
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
623
539
-
Leu
CAG
[ENA]
¢þ
>C191004280
AP018718
Betaproteobacteria
Sulfuricystis multivorans J5B [AP018718]
669512
669596
+
Leu
CAG
-
¡û
>C191007509
AP019373
Betaproteobacteria
Sulfuricystis thermophila M52 [AP019373]
688127
688211
+
Leu
CAG
-
¡û
>C191171932
CP039740
Alphaproteobacteria
Pseudolabrys sp. FHR47 [CP039740]
298178
298262
+
Leu
CAG
-
¡û
>W1910128397
BHVV01000008
Betaproteobacteria
Sulfurisoma sediminicola BSN1 [BHVV]
580777
580861
+
Leu
CAG
[ENA]
¡û
>C151104303
LN829118
Alphaproteobacteria
Candidatus Filomicrobium marinum strain W [LN829118]
1612289
1612205
-
Leu
CAG
[Ensembl]
¡û
>C151104349
LN829119
Alphaproteobacteria
Candidatus Filomicrobium marinum Y [LN829119]
1612284
1612200
-
Leu
CAG
[Ensembl]
¡û
>ENV09001201
ABSQ01048210
Freshwater sediment metagenome lwMethenol_C1
247
163
-
Leu
CAG
[ENA]
¡û
>C161038406
CP011971
Gammaproteobacteria
Steroidobacter denitrificans DSM 18526 [CP011971]
1046567
1046483
-
Leu
CAG
[Ensembl]
¡û
>W1610074138
BCWK01000019
Betaproteobacteria
Caldimonas taiwanensis NBRC 104434 [BCWK]
35098
35014
-
Leu
CAG
[ENA]
¡û
>W1610723338
LMDI01000001
Betaproteobacteria
Rhizobacter sp. Root1221 [LMDI]
267508
267424
-
Leu
CAG
[ENA]
¡û
>W1610753949
LNEZ01000095
Alphaproteobacteria
Rhizobiales bacterium Ga0077548 [LNEZ]
21703
21787
+
Leu
CAG
[ENA]
¡û
>W1710071256
BCWK01000019
Betaproteobacteria
Caldimonas taiwanensis NBRC 104434 [BCWK]
35098
35014
-
Leu
CAG
[ENA]
¡û
>W1710524901
FNJC01000001
Alphaproteobacteria
Filomicrobium insigne [FNJC]
602547
602631
+
Leu
CAG
[ENA]
¡û
Identical group No.202047 (2 seq.)
>WENV181297778
OFHK01129218
[OFHK] soil metagenome; Clay
227
143
-
Leu
CAG
[ENA]
¢þ
>ENV09001120
ABSQ01034972
Freshwater sediment metagenome lwMethenol_C1
112
28
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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