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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwMethenol_C1
Anticodon = CCG
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.372366 (4 seq.)
>W1711076439
LSLI01000039
Betaproteobacteria
Candidatus Gallionella acididurans [LSLI]
12916
12992
+
Arg
CCG
[ENA]
¡û
>WENV170558643
CXWL01082336
[CXWL] groundwater metagenome; biofilm material
641
565
-
Arg
CCG
[ENA]
¢þ
>ENV09001161
ABSQ01041741
Freshwater sediment metagenome lwMethenol_C1
132
56
-
Arg
CCG
[ENA]
¡û
>W1610915744
LSLI01000039
Betaproteobacteria
Candidatus Gallionella acididurans [LSLI]
12916
12992
+
Arg
CCG
[ENA]
¡û
Identical group No.408600 (1 seq.)
>ENV09001089
ABSQ01030965
Freshwater sediment metagenome lwMethenol_C1
195
269
+
Arg
CCG
[ENA]
¡û
Identical group No.408615 (1 seq.)
>ENV09001205
ABSQ01049204
Freshwater sediment metagenome lwMethenol_C1
595
671
+
Arg
CCG
[ENA]
¡û
Identical group No.604462 (1 seq.)
>ENV09001002
ABSQ01014045
Freshwater sediment metagenome lwMethenol_C1
491
416
-
Arg
CCG
[ENA]
¡û
Identical group No.745852 (1 seq.)
>ENV09001246
ABSQ01055500
Freshwater sediment metagenome lwMethenol_C1
808
880
+
Pseudo
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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