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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwMethenol_C1
Anticodon = CGA
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.27651 (1 seq.)
>ENV09001006
ABSQ01014579
Freshwater sediment metagenome lwMethenol_C1
217
126
-
Ser
CGA
[ENA]
¡û
Identical group No.42089 (1 seq.)
>ENV09001255
ABSQ01057136
Freshwater sediment metagenome lwMethenol_C1
264
354
+
Ser
CGA
[ENA]
¡û
Identical group No.63497 (4 seq.)
>WENV180038772
LLBY010005056
[LLBY] soil metagenome; soil from tomato rhizosphere
31130
31043
-
Ser
CGA
[ENA]
¢þ
>WENV180040743
LLBZ010010451
[LLBZ] soil metagenome; soil from tomato rhizosphere
26893
26806
-
Ser
CGA
[ENA]
¢þ
>ENV09000858
ABSP01052241
Freshwater sediment metagenome lwMethane_C1
572
483
-
Ser
CGA
[ENA]
¡û
>ENV09000936
ABSQ01001141
Freshwater sediment metagenome lwMethenol_C1
809
719
-
Ser
CGA
[ENA]
¡û
Identical group No.65626 (1 seq.)
>ENV09001196
ABSQ01046481
Freshwater sediment metagenome lwMethenol_C1
788
699
-
Ser
CGA
[ENA]
¡û
Identical group No.65627 (2 seq.)
>W08009334
ABOX01000011
Verrucomicrobiota
Pedosphaera parvula Ellin514 [ABOX]
128750
128664
-
Ser
CGA
[ENA]
¡û
>ENV09001204
ABSQ01049193
Freshwater sediment metagenome lwMethenol_C1
6
95
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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