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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwMethenol_C1
Anticodon = CGT
HIT:
9 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.311868 (3 seq.)
>WENV181192194
OEPS010463924
[OEPS] soil metagenome; soil
56
132
+
Thr
CGT
[ENA]
¢þ
>SRA1002849
SRR002326.57595
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
119
43
-
Thr
CGT
[SRA]
>ENV09000973
ABSQ01006531
Freshwater sediment metagenome lwMethenol_C1
612
536
-
Thr
CGT
[ENA]
¡û
Identical group No.408619 (1 seq.)
>ENV09001238
ABSQ01054888
Freshwater sediment metagenome lwMethenol_C1
593
519
-
Thr
CGT
[ENA]
¡û
Identical group No.477591 (7 seq.)
>W1710925676
LODL01000013
Betaproteobacteria
Dechloromonas denitrificans [LODL]
231084
231159
+
Thr
CGT
[ENA]
¡û
>W131159959
AQWB01000017
Betaproteobacteria
Rhodocyclus sp. UW 659-1-F08 [AQWB]
806
731
-
Thr
CGT
[ENA]
¡û
>WENV170009793
APMI01003060
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
7924
7999
+
Thr
CGT
[ENA]
¢þ
>WENV170961731
MLJW01000726
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
4858
4933
+
Thr
CGT
[ENA]
¢þ
>W1910730015
MHBT01000091
Betaproteobacteria
Methylophilales bacterium RIFCSPHIGHO2_02_FULL_57_10 [MHBT]
551
626
+
Thr
CGT
[ENA]
¡û
>ENV09001234
ABSQ01054548
Freshwater sediment metagenome lwMethenol_C1
338
263
-
Thr
CGT
[ENA]
¡û
>W1610783322
LODL01000013
Betaproteobacteria
Dechloromonas denitrificans [LODL]
231084
231159
+
Thr
CGT
[ENA]
¡û
Identical group No.486958 (26 seq.)
>W1711081748
LSSY01000020
Actinomycetota
Actinobacteria bacterium SCGC AG-212-D09 [LSSY]
3843
3770
-
Thr
CGT
[ENA]
¡û
>W131226478
AUEK01000006
Actinomycetota
Candidatus Solirubrobacter pratensis URHD0082 [AUEK]
410609
410537
-
Thr
CGT
[ENA]
¡û
>W1711391521
MELQ01000114
Actinomycetota
Actinobacteria bacterium RBG_16_68_12 [MELQ]
494
422
-
Thr
CGT
[ENA]
¡û
>W1711573384
MNDB01000062
Actinomycetota
Actinobacteria bacterium 13_2_20CM_68_14 [MNDB]
6891
6819
-
Thr
CGT
[ENA]
¡û
>WENV180022295
FTFY01000093
[FTFY] metagenome; soil
86
14
-
Thr
CGT
[ENA]
¢þ
>WENV180029940
FTJL01027437
[FTJL] metagenome; soil
119
191
+
Thr
CGT
[ENA]
¢þ
>WENV180030042
FTJL01084948
[FTJL] metagenome; soil
265
193
-
Thr
CGT
[ENA]
¢þ
>WENV180038783
LLBY010005538
[LLBY] soil metagenome; soil from tomato rhizosphere
179
252
+
Thr
CGT
[ENA]
¢þ
>WENV180040875
LLBZ010019820
[LLBZ] soil metagenome; soil from tomato rhizosphere
561
634
+
Thr
CGT
[ENA]
¢þ
>WENV180345017
OBLL01483872
[OBLL] soil metagenome; soil
14
86
+
Thr
CGT
[ENA]
¢þ
>WENV180354847
OBNE01024234
[OBNE] groundwater metagenome; groundwater
138
210
+
Thr
CGT
[ENA]
¢þ
>WENV180356481
OBNK01036038
[OBNK] sediment metagenome; sediment
245
173
-
Thr
CGT
[ENA]
¢þ
>WENV180691116
OCZS010063116
[OCZS] soil metagenome; soil
1170
1098
-
Thr
CGT
[ENA]
¢þ
>WENV181123110
OEFO01103507
[OEFO] soil metagenome; soil
117
43
-
Thr
CGT
[ENA]
¢þ
>WENV181155325
OEID01098891
[OEID] soil metagenome; soil
85
159
+
Thr
CGT
[ENA]
¢þ
>WENV181163844
OEIQ01296523
[OEIQ] soil metagenome; soil
96
169
+
Thr
CGT
[ENA]
¢þ
>WENV181165477
OEIS01003967
[OEIS] soil metagenome; soil
519
591
+
Thr
CGT
[ENA]
¢þ
>WENV181294845
OFHH01053470
[OFHH] soil metagenome; Clay
240
167
-
Thr
CGT
[ENA]
¢þ
>WENV181295562
OFHI01069029
[OFHI] soil metagenome; Clay
205
278
+
Thr
CGT
[ENA]
¢þ
>WENV183724198
PJQE01001065
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
5211
5139
-
Thr
CGT
[ENA]
¢þ
>WENV170566120
FKKE01007022
[FKKE] freshwater metagenome; freshwater
13283
13211
-
Thr
CGT
[ENA]
¢þ
>WENV170566183
FKKE01008602
[FKKE] freshwater metagenome; freshwater
3558
3485
-
Thr
CGT
[ENA]
¢þ
>WENV170573316
FLYK01006695
[FLYK] hot springs metagenome; Sediment
185
258
+
Thr
CGT
[ENA]
¢þ
>ENV09000853
ABSP01051017
Freshwater sediment metagenome lwMethane_C1
248
176
-
Thr
CGT
[ENA]
¡û
>ENV09001077
ABSQ01028815
Freshwater sediment metagenome lwMethenol_C1
716
644
-
Thr
CGT
[ENA]
¡û
>W1610920583
LSSY01000020
Actinomycetota
Actinobacteria bacterium SCGC AG-212-D09 [LSSY]
3843
3770
-
Thr
CGT
[ENA]
¡û
Identical group No.487849 (5 seq.)
>WENV170715101
LNFM01133432
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
967
1042
+
Thr
CGT
[ENA]
¢þ
>W1810476978
QAOL01000010
Betaproteobacteria
Nitrosomonas ureae Nm4 [QAOL]
57396
57471
+
Thr
CGT
[ENA]
¡û
>ENV09001235
ABSQ01054841
Freshwater sediment metagenome lwMethenol_C1
572
497
-
Thr
CGT
[ENA]
¡û
>C161055561
CP013341
Betaproteobacteria
Nitrosomonas ureae Nm10 [CP013341]
844704
844779
+
Thr
CGT
[Ensembl]
¡û
>W1710527966
FNLN01000072
Betaproteobacteria
Nitrosomonas ureae [FNLN]
191
266
+
Thr
CGT
[ENA]
¡û
Identical group No.604488 (1 seq.)
>ENV09001192
ABSQ01045718
Freshwater sediment metagenome lwMethenol_C1
87
162
+
Thr
CGT
[ENA]
¡û
Identical group No.677811 (14 seq.)
>W1711409346
MGOD01000080
Chloroflexota
Chloroflexi bacterium RBG_16_70_13 [MGOD]
26132
26058
-
Thr
CGT
[ENA]
¡û
>WENV180291869
OBIV01205658
[OBIV] soil metagenome; Clay
123
49
-
Thr
CGT
[ENA]
¢þ
>WENV180308878
OBJR01284817
[OBJR] soil metagenome; soil
99
25
-
Thr
CGT
[ENA]
¢þ
>WENV180327471
OBKT01158244
[OBKT] soil metagenome; soil
121
47
-
Thr
CGT
[ENA]
¢þ
>WENV180352891
OBLQ010429429
[OBLQ] soil metagenome; soil
63
137
+
Thr
CGT
[ENA]
¢þ
>WENV180355944
OBNJ01009519
[OBNJ] sediment metagenome; sediment
237
163
-
Thr
CGT
[ENA]
¢þ
>WENV181292109
OFHD01037897
[OFHD] soil metagenome; Clay
389
315
-
Thr
CGT
[ENA]
¢þ
>WENV181297221
OFHK01018146
[OFHK] soil metagenome; Clay
1168
1242
+
Thr
CGT
[ENA]
¢þ
>WENV183660449
ORJL010025438
[ORJL] groundwater metagenome; groundwater
48513
48439
-
Thr
CGT
[ENA]
¢þ
>WENV183689889
ORMF011508709
[ORMF] groundwater metagenome; groundwater
381
307
-
Thr
CGT
[ENA]
¢þ
>WENV183749215
PPFU01135877
[PPFU] hypolithon metagenome; Antarctic Hypolithon
27
101
+
Thr
CGT
[ENA]
¢þ
>ENV09000882
ABSP01055879
Freshwater sediment metagenome lwMethane_C1
162
88
-
Thr
CGT
[ENA]
¡û
>ENV09001099
ABSQ01032359
Freshwater sediment metagenome lwMethenol_C1
433
359
-
Thr
CGT
[ENA]
¡û
>ENV09001258
ABSQ01057383
Freshwater sediment metagenome lwMethenol_C1
379
453
+
Thr
CGT
[ENA]
¡û
Identical group No.745840 (1 seq.)
>ENV09001104
ABSQ01032545
Freshwater sediment metagenome lwMethenol_C1
527
601
+
Thr
CGT
[ENA]
¡û
Identical group No.745845 (1 seq.)
>ENV09001170
ABSQ01043069
Freshwater sediment metagenome lwMethenol_C1
762
688
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK