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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwMethenol_C1
Anticodon = CTC
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.342011 (3 seq.)
>W1711409354
MGOD01000110
Chloroflexota
Chloroflexi bacterium RBG_16_70_13 [MGOD]
5559
5635
+
Glu
CTC
[ENA]
¡û
>WENV180342590
OBLJ01054140
[OBLJ] soil metagenome; Clay
408
332
-
Glu
CTC
[ENA]
¢þ
>ENV09001152
ABSQ01039564
Freshwater sediment metagenome lwMethenol_C1
641
717
+
Glu
CTC
[ENA]
¡û
Identical group No.408584 (1 seq.)
>ENV09000969
ABSQ01005235
Freshwater sediment metagenome lwMethenol_C1
551
627
+
Glu
CTC
[ENA]
¡û
Identical group No.604478 (1 seq.)
>ENV09001109
ABSQ01033203
Freshwater sediment metagenome lwMethenol_C1
22
97
+
Glu
CTC
[ENA]
¡û
Identical group No.604487 (1 seq.)
>ENV09001185
ABSQ01044974
Freshwater sediment metagenome lwMethenol_C1
448
373
-
Glu
CTC
[ENA]
¡û
Identical group No.604496 (1 seq.)
>ENV09001252
ABSQ01056870
Freshwater sediment metagenome lwMethenol_C1
172
100
-
Glu
CTC
[ENA]
¡û
Identical group No.729591 (2 seq.)
>WENV181165825
OEIS01206713
[OEIS] soil metagenome; soil
125
51
-
Glu
CTC
[ENA]
¢þ
>ENV09001028
ABSQ01018379
Freshwater sediment metagenome lwMethenol_C1
14
88
+
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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