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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwMethenol_C1
Anticodon = CTG
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.680038 (8 seq.)
>WENV181371792
OFQW01000285
[OFQW] wastewater metagenome; Exp Tend NO 90WW
3674
3748
+
Gln
CTG
[ENA]
¢þ
>WENV181372566
OFQX01000385
[OFQX] wastewater metagenome; WWTP Novara (Effluent)
3824
3898
+
Gln
CTG
[ENA]
¢þ
>WENV181372684
OFQX01002395
[OFQX] wastewater metagenome; WWTP Novara (Effluent)
2380
2454
+
Gln
CTG
[ENA]
¢þ
>WENV181375800
OFQZ01003471
[OFQZ] wastewater metagenome; Exp Tend NO 0WW
3838
3912
+
Gln
CTG
[ENA]
¢þ
>WENV181380642
OFRE01001228
[OFRE] wastewater metagenome; Exp Tend NO 50WW
3597
3523
-
Gln
CTG
[ENA]
¢þ
>WENV181389649
OFRO01001274
[OFRO] wastewater metagenome; Exp Tend NO 10WW
3880
3954
+
Gln
CTG
[ENA]
¢þ
>WENV170878745
MDTC01082589
[MDTC] marine metagenome; seawater
286
360
+
Gln
CTG
[ENA]
¢þ
>ENV09001171
ABSQ01043102
Freshwater sediment metagenome lwMethenol_C1
352
278
-
Gln
CTG
[ENA]
¡û
Identical group No.745830 (1 seq.)
>ENV09000944
ABSQ01001678
Freshwater sediment metagenome lwMethenol_C1
659
585
-
Gln
CTG
[ENA]
¡û
Identical group No.821276 (1 seq.)
>ENV09001189
ABSQ01045429
Freshwater sediment metagenome lwMethenol_C1
464
391
-
Gln
CTG
[ENA]
¡û
Identical group No.821278 (1 seq.)
>ENV09001237
ABSQ01054887
Freshwater sediment metagenome lwMethenol_C1
636
706
+
Gln
CTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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