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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwMethenol_C1
Anticodon = CTT
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.493209 (14 seq.)
>W1711583630
MNXM01000003
Armatimonadota
Armatimonadetes bacterium CG2_30_59_28 [MNXM]
18526
18451
-
Lys
CTT
[ENA]
¡û
>WENV180249522
OBEQ010204837
[OBEQ] groundwater metagenome; groundwater
413
485
+
Lys
CTT
[ENA]
¢þ
>WENV180291318
OBIV01037126
[OBIV] soil metagenome; Clay
169
241
+
Lys
CTT
[ENA]
¢þ
>WENV180320938
OBKQ01065213
[OBKQ] soil metagenome; Clay
268
195
-
Lys
CTT
[ENA]
¢þ
>WENV180342518
OBLJ01037766
[OBLJ] soil metagenome; Clay
576
503
-
Lys
CTT
[ENA]
¢þ
>WENV180690415
OCZS010005815
[OCZS] soil metagenome; soil
1352
1426
+
Lys
CTT
[ENA]
¢þ
>WENV181123068
OEFO01073507
[OEFO] soil metagenome; soil
136
64
-
Lys
CTT
[ENA]
¢þ
>WENV183665760
ORJL010489470
[ORJL] groundwater metagenome; groundwater
225
153
-
Lys
CTT
[ENA]
¢þ
>WENV183668614
ORJL010756688
[ORJL] groundwater metagenome; groundwater
242
170
-
Lys
CTT
[ENA]
¢þ
>WENV183689365
ORMF011429418
[ORMF] groundwater metagenome; groundwater
477
405
-
Lys
CTT
[ENA]
¢þ
>WENV183724465
PJQE01018121
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
639
712
+
Lys
CTT
[ENA]
¢þ
>WENV170565839
FKKE01001286
[FKKE] freshwater metagenome; freshwater
1805
1878
+
Lys
CTT
[ENA]
¢þ
>ENV09000977
ABSQ01007238
Freshwater sediment metagenome lwMethenol_C1
282
354
+
Lys
CTT
[ENA]
¡û
>ENV09001228
ABSQ01053678
Freshwater sediment metagenome lwMethenol_C1
509
437
-
Lys
CTT
[ENA]
¡û
Identical group No.495173 (4 seq.)
>WENV180039576
LLBY010095808
[LLBY] soil metagenome; soil from tomato rhizosphere
2268
2193
-
Lys
CTT
[ENA]
¢þ
>WENV180695330
OCZS013334364
[OCZS] soil metagenome; soil
139
64
-
Lys
CTT
[ENA]
¢þ
>ENV09001218
ABSQ01051039
Freshwater sediment metagenome lwMethenol_C1
562
637
+
Lys
CTT
[ENA]
¡û
>ENV09001506
ABSR01019714
Freshwater sediment metagenome lwMethylamine_C1
669
744
+
Lys
CTT
[ENA]
¡û
Identical group No.499872 (5 seq.)
>WENV183512575
OMKS01000785
[OMKS] sediment metagenome; hot spring sediment
12636
12711
+
Lys
CTT
[ENA]
¢þ
>WENV170677369
LDZT01005150
[LDZT] terrestrial metagenome; oil reservoir sample SB1
16247
16172
-
Lys
CTT
[ENA]
¢þ
>ENV09000996
ABSQ01012014
Freshwater sediment metagenome lwMethenol_C1
600
525
-
Lys
CTT
[ENA]
¡û
>W1610613439
LGFV01000038
Actinomycetota
Actinobacteria bacterium 66_15 [LGFV]
16247
16172
-
Lys
CTT
[ENA]
¡û
>W1710734611
LGFV01000038
Actinomycetota
Actinobacteria bacterium 66_15 [LGFV]
16247
16172
-
Lys
CTT
[ENA]
¡û
Identical group No.511672 (9 seq.)
>WENV180022518
FTGI01001540
[FTGI] metagenome; soil
1713
1788
+
Lys
CTT
[ENA]
¢þ
>WENV180251456
OBEQ010367643
[OBEQ] groundwater metagenome; groundwater
2028
2103
+
Lys
CTT
[ENA]
¢þ
>WENV180304216
OBJH01120781
[OBJH] soil metagenome; soil
138
213
+
Lys
CTT
[ENA]
¢þ
>WENV180344675
OBLL01108366
[OBLL] soil metagenome; soil
227
302
+
Lys
CTT
[ENA]
¢þ
>WENV180354070
OBLQ011351458
[OBLQ] soil metagenome; soil
121
46
-
Lys
CTT
[ENA]
¢þ
>WENV181164814
OEIR01384441
[OEIR] soil metagenome; soil
210
135
-
Lys
CTT
[ENA]
¢þ
>WENV181165756
OEIS01156864
[OEIS] soil metagenome; soil
232
157
-
Lys
CTT
[ENA]
¢þ
>WENV183663364
ORJL010277271
[ORJL] groundwater metagenome; groundwater
5168
5093
-
Lys
CTT
[ENA]
¢þ
>ENV09001025
ABSQ01017518
Freshwater sediment metagenome lwMethenol_C1
591
516
-
Lys
CTT
[ENA]
¡û
Identical group No.524409 (3 seq.)
>W1910697392
MEKR01000094
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_61_28 [MEKR]
5258
5183
-
Lys
CTT
[ENA]
¡û
>W1910697649
MEKX01000163
Acidobacteriota
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_54_10 [MEKX]
8616
8691
+
Lys
CTT
[ENA]
¡û
>ENV09001230
ABSQ01054192
Freshwater sediment metagenome lwMethenol_C1
261
186
-
Lys
CTT
[ENA]
¡û
Identical group No.604447 (1 seq.)
>ENV09000920
ABSQ01000059
Freshwater sediment metagenome lwMethenol_C1
84
9
-
Lys
CTT
[ENA]
¡û
Identical group No.604449 (1 seq.)
>ENV09000928
ABSQ01000464
Freshwater sediment metagenome lwMethenol_C1
1294
1369
+
Lys
CTT
[ENA]
¡û
Identical group No.604459 (1 seq.)
>ENV09000994
ABSQ01012002
Freshwater sediment metagenome lwMethenol_C1
198
270
+
Lys
CTT
[ENA]
¡û
Identical group No.604484 (1 seq.)
>ENV09001137
ABSQ01037261
Freshwater sediment metagenome lwMethenol_C1
456
531
+
Lys
CTT
[ENA]
¡û
Identical group No.604493 (1 seq.)
>ENV09001223
ABSQ01052761
Freshwater sediment metagenome lwMethenol_C1
813
738
-
Lys
CTT
[ENA]
¡û
Identical group No.678271 (3 seq.)
>W1711409390
MGOE01000100
Chloroflexota
Chloroflexi bacterium RBG_16_72_14 [MGOE]
45731
45657
-
Lys
CTT
[ENA]
¡û
>WENV180690868
OCZS010030976
[OCZS] soil metagenome; soil
1493
1567
+
Lys
CTT
[ENA]
¢þ
>ENV09001101
ABSQ01032430
Freshwater sediment metagenome lwMethenol_C1
61
135
+
Lys
CTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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