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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwMethenol_C1
Anticodon = GAA
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.570596 (9 seq.)
>WENV180039341
LLBY010053490
[LLBY] soil metagenome; soil from tomato rhizosphere
134
209
+
Phe
GAA
[ENA]
¢þ
>WENV183661903
ORJL010147362
[ORJL] groundwater metagenome; groundwater
752
680
-
Phe
GAA
[ENA]
¢þ
>WENV183667714
ORJL010675709
[ORJL] groundwater metagenome; groundwater
661
589
-
Phe
GAA
[ENA]
¢þ
>WENV183688796
ORMF011344882
[ORMF] groundwater metagenome; groundwater
2024
1952
-
Phe
GAA
[ENA]
¢þ
>WENV183724304
PJQE01005853
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
2198
2270
+
Phe
GAA
[ENA]
¢þ
>WENV170565742
FKKE01000357
[FKKE] freshwater metagenome; freshwater
10313
10241
-
Phe
GAA
[ENA]
¢þ
>WENV170565823
FKKE01001161
[FKKE] freshwater metagenome; freshwater
15431
15356
-
Phe
GAA
[ENA]
¢þ
>W1810784130
QQZY01000005
Actinomycetota
Gaiella occulta F2-233 [QQZY]
141639
141567
-
Phe
GAA
[ENA]
¡û
>ENV09001212
ABSQ01049986
Freshwater sediment metagenome lwMethenol_C1
221
294
+
Phe
GAA
[ENA]
¡û
Identical group No.584226 (7 seq.)
>W1910730031
MHBU01000023
Betaproteobacteria
Methylotenera sp. RIFCSPLOWO2_02_FULL_45_14 [MHBU]
35873
35948
+
Phe
GAA
[ENA]
¡û
>ENV09000801
ABSP01040452
Freshwater sediment metagenome lwMethane_C1
351
276
-
Phe
GAA
[ENA]
¡û
>ENV09000941
ABSQ01001555
Freshwater sediment metagenome lwMethenol_C1
1528
1601
+
Phe
GAA
[ENA]
¡û
>WENV057302
AACY023290787
Marine microbial communities from Global Ocean Sampling (GOS)
812
889
+
Phe
GAA
[ENA]
>WENV057961
AACY023312742
Marine microbial communities from Global Ocean Sampling (GOS)
1177
1254
+
Phe
GAA
[ENA]
>WENV058756
AACY023340260
Marine microbial communities from Global Ocean Sampling (GOS)
948
1025
+
Phe
GAA
[ENA]
>WENV058837
AACY023343874
Marine microbial communities from Global Ocean Sampling (GOS)
974
1051
+
Phe
GAA
[ENA]
Identical group No.604445 (4 seq.)
>W1711506588
MKWN01000044
Betaproteobacteria
Thiobacillus sp. 65-29 [MKWN]
83488
83413
-
Phe
GAA
[ENA]
¡û
>WENV170007429
AMWB02122255
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
1116
1191
+
Phe
GAA
[ENA]
¢þ
>W1910015379
BDOQ01000003
Betaproteobacteria
Novimethylophilus kurashikiensis La2-4 [BDOQ]
694880
694955
+
Phe
GAA
[ENA]
¡û
>ENV09000918
ABSQ01000046
Freshwater sediment metagenome lwMethenol_C1
1130
1205
+
Phe
GAA
[ENA]
¡û
Identical group No.604455 (2 seq.)
>WENV181227830
OFDN01053167
[OFDN] hot springs metagenome; Water
138
66
-
Phe
GAA
[ENA]
¢þ
>ENV09000979
ABSQ01007342
Freshwater sediment metagenome lwMethenol_C1
282
208
-
Phe
GAA
[ENA]
¡û
Identical group No.604458 (1 seq.)
>ENV09000992
ABSQ01011813
Freshwater sediment metagenome lwMethenol_C1
652
577
-
Phe
GAA
[ENA]
¡û
Identical group No.604477 (1 seq.)
>ENV09001103
ABSQ01032545
Freshwater sediment metagenome lwMethenol_C1
388
463
+
Phe
GAA
[ENA]
¡û
Identical group No.604482 (2 seq.)
>WENV183691749
ORMF011811116
[ORMF] groundwater metagenome; groundwater
692
617
-
Phe
GAA
[ENA]
¢þ
>ENV09001127
ABSQ01036567
Freshwater sediment metagenome lwMethenol_C1
858
783
-
Phe
GAA
[ENA]
¡û
Identical group No.604485 (1 seq.)
>ENV09001146
ABSQ01038967
Freshwater sediment metagenome lwMethenol_C1
79
154
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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