This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwMethenol_C1
Anticodon = GAC
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.262763 (1 seq.)
>ENV09001021
ABSQ01017242
Freshwater sediment metagenome lwMethenol_C1
669
746
+
Val
GAC
[ENA]
¡û
Identical group No.408583 (1 seq.)
>ENV09000962
ABSQ01002769
Freshwater sediment metagenome lwMethenol_C1
878
802
-
Val
GAC
[ENA]
¡û
Identical group No.408586 (1 seq.)
>ENV09000984
ABSQ01009445
Freshwater sediment metagenome lwMethenol_C1
426
500
+
Val
GAC
[ENA]
¡û
Identical group No.408620 (1 seq.)
>ENV09001259
ABSQ01057436
Freshwater sediment metagenome lwMethenol_C1
269
193
-
Val
GAC
[ENA]
¡û
Identical group No.745835 (1 seq.)
>ENV09001049
ABSQ01021960
Freshwater sediment metagenome lwMethenol_C1
453
379
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK