This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwMethenol_C1
Anticodon = GAG
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.83455 (1 seq.)
>ENV09001173
ABSQ01043147
Freshwater sediment metagenome lwMethenol_C1
96
184
+
Leu
GAG
[ENA]
¡û
Identical group No.143239 (1 seq.)
>ENV09001072
ABSQ01026706
Freshwater sediment metagenome lwMethenol_C1
450
364
-
Leu
GAG
[ENA]
¡û
Identical group No.173207 (2 seq.)
>WENV170662441
JXWW01068802
[JXWW] soil metagenome; rice field; organic GM Plot
108
192
+
Leu
GAG
[ENA]
¢þ
>ENV09001226
ABSQ01053531
Freshwater sediment metagenome lwMethenol_C1
203
121
-
Leu
GAG
[ENA]
¡û
Identical group No.191374 (2 seq.)
>WENV180356097
OBNJ01031745
[OBNJ] sediment metagenome; sediment
216
132
-
Leu
GAG
[ENA]
¢þ
>ENV09001202
ABSQ01048709
Freshwater sediment metagenome lwMethenol_C1
183
267
+
Leu
GAG
[ENA]
¡û
Identical group No.208684 (1 seq.)
>ENV09001080
ABSQ01029599
Freshwater sediment metagenome lwMethenol_C1
438
522
+
Leu
GAG
[ENA]
¡û
Identical group No.208686 (1 seq.)
>ENV09001207
ABSQ01049322
Freshwater sediment metagenome lwMethenol_C1
465
381
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK