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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwMethenol_C1
Anticodon = GCA
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.779480 (15 seq.)
>WENV180097525
MTBK01194003
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
460
387
-
Cys
GCA
[ENA]
¢þ
>WENV181188063
OEOE01018604
[OEOE] activated sludge metagenome; Activated Sludge
596
669
+
Cys
GCA
[ENA]
¢þ
>WENV181189294
OEOF01019788
[OEOF] activated sludge metagenome; Activated Sludge
568
641
+
Cys
GCA
[ENA]
¢þ
>WENV181379508
OFRD01002393
[OFRD] wastewater metagenome; Exp Tend CN 100WW
3522
3595
+
Cys
GCA
[ENA]
¢þ
>WENV181400686
OFSF01018302
[OFSF] wastewater metagenome; Exp Tend VB 100WW
928
1001
+
Cys
GCA
[ENA]
¢þ
>WENV170558924
CXWL01100330
[CXWL] groundwater metagenome; biofilm material
7759
7832
+
Cys
GCA
[ENA]
¢þ
>WENV170601278
FUWD010164998
[FUWD] metagenome; unknown
183
256
+
Cys
GCA
[ENA]
¢þ
>WENV170706044
LNAP01000968
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
31423
31496
+
Cys
GCA
[ENA]
¢þ
>WENV170961468
MLJW01000057
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
107714
107787
+
Cys
GCA
[ENA]
¢þ
>C151104084
LN794158
Betaproteobacteria
Candidatus Methylopumilus turicensis MMS-10A-171 [LN794158]
1026708
1026635
-
Cys
GCA
[Ensembl]
¡û
>ENV09001222
ABSQ01052576
Freshwater sediment metagenome lwMethenol_C1
675
748
+
Cys
GCA
[ENA]
¡û
>ENV09001520
ABSR01024042
Freshwater sediment metagenome lwMethylamine_C1
435
362
-
Cys
GCA
[ENA]
¡û
>ENV09001595
ABSR01034670
Freshwater sediment metagenome lwMethylamine_C1
364
437
+
Cys
GCA
[ENA]
¡û
>C10109347
CP002056
Betaproteobacteria
Methylotenera versatilis 301 [CP002056]
794849
794922
+
Cys
GCA
[Ensembl]
¡û
>W1511433556
JUHH01000001
Betaproteobacteria
Methylotenera sp. G11 [JUHH]
973386
973313
-
Cys
GCA
[ENA]
¡û
Identical group No.821269 (1 seq.)
>ENV09000939
ABSQ01001472
Freshwater sediment metagenome lwMethenol_C1
642
715
+
Cys
GCA
[ENA]
¡û
Identical group No.821272 (1 seq.)
>ENV09001048
ABSQ01021960
Freshwater sediment metagenome lwMethenol_C1
555
482
-
Cys
GCA
[ENA]
¡û
Identical group No.821274 (1 seq.)
>ENV09001159
ABSQ01040946
Freshwater sediment metagenome lwMethenol_C1
78
5
-
Cys
GCA
[ENA]
¡û
Identical group No.821280 (1 seq.)
>ENV09001254
ABSQ01056976
Freshwater sediment metagenome lwMethenol_C1
407
480
+
Pseudo
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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