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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwMethenol_C1
Anticodon = GGC
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.489932 (10 seq.)
>WENV180292199
OBIV01347517
[OBIV] soil metagenome; Clay
153
229
+
Ala
GGC
[ENA]
¢þ
>WENV180691226
OCZS010080544
[OCZS] soil metagenome; soil
1032
1105
+
Ala
GGC
[ENA]
¢þ
>WENV183748203
PPFU01019076
[PPFU] hypolithon metagenome; Antarctic Hypolithon
16602
16529
-
Ala
GGC
[ENA]
¢þ
>WENV170986826
MWVX01084734
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
404
329
-
Ala
GGC
[ENA]
¢þ
>WENV170988147
MWVX01381537
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
83
8
-
Ala
GGC
[ENA]
¢þ
>WENV170989060
MWVY01075396
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
90
15
-
Ala
GGC
[ENA]
¢þ
>WENV170994197
MWWD01032337
[MWWD] soil metagenome; MS2-2 sample; Antarctic (ecotone) soil
382
457
+
Ala
GGC
[ENA]
¢þ
>WENV170997224
MWWG01054677
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
77
2
-
Ala
GGC
[ENA]
¢þ
>WENV170997785
MWWH01037069
[MWWH] soil metagenome; MG3-2 sample; Antarctic (ecotone) soil
479
554
+
Ala
GGC
[ENA]
¢þ
>ENV09001126
ABSQ01036462
Freshwater sediment metagenome lwMethenol_C1
602
674
+
Ala
GGC
[ENA]
¡û
Identical group No.578009 (2 seq.)
>WENV181170470
OEIV010049767
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
569
496
-
Ala
GGC
[ENA]
¢þ
>ENV09000985
ABSQ01009709
Freshwater sediment metagenome lwMethenol_C1
561
486
-
Ala
GGC
[ENA]
¡û
Identical group No.604460 (1 seq.)
>ENV09000999
ABSQ01013161
Freshwater sediment metagenome lwMethenol_C1
463
388
-
Ala
GGC
[ENA]
¡û
Identical group No.745837 (5 seq.)
>WENV183703184
PDVJ01004624
[PDVJ] alkali sediment metagenome; glacial lake sediment
14
86
+
Ala
GGC
[ENA]
¢þ
>WENV183703277
PDVJ01007488
[PDVJ] alkali sediment metagenome; glacial lake sediment
641
712
+
Ala
GGC
[ENA]
¢þ
>WENV183703564
PDVJ01023025
[PDVJ] alkali sediment metagenome; glacial lake sediment
524
453
-
Ala
GGC
[ENA]
¢þ
>WENV183703773
PDVJ01044650
[PDVJ] alkali sediment metagenome; glacial lake sediment
735
663
-
Ala
GGC
[ENA]
¢þ
>ENV09001053
ABSQ01022250
Freshwater sediment metagenome lwMethenol_C1
133
61
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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