This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwMethenol_C1
Anticodon = GGT
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.408591 (1 seq.)
>ENV09001016
ABSQ01016216
Freshwater sediment metagenome lwMethenol_C1
288
362
+
Thr
GGT
[ENA]
¡û
Identical group No.530090 (4 seq.)
>WENV180304189
OBJH01101935
[OBJH] soil metagenome; soil
106
179
+
Thr
GGT
[ENA]
¢þ
>WENV181385926
OFRL01000125
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
377
304
-
Thr
GGT
[ENA]
¢þ
>WENV181400833
OFSF01027883
[OFSF] wastewater metagenome; Exp Tend VB 100WW
931
858
-
Thr
GGT
[ENA]
¢þ
>ENV09001030
ABSQ01018935
Freshwater sediment metagenome lwMethenol_C1
763
690
-
Thr
GGT
[ENA]
¡û
Identical group No.604464 (1 seq.)
>ENV09001007
ABSQ01014604
Freshwater sediment metagenome lwMethenol_C1
784
712
-
Thr
GGT
[ENA]
¡û
Identical group No.604483 (2 seq.)
>WENV181123135
OEFO01119783
[OEFO] soil metagenome; soil
130
205
+
Thr
GGT
[ENA]
¢þ
>ENV09001131
ABSQ01036855
Freshwater sediment metagenome lwMethenol_C1
784
859
+
Thr
GGT
[ENA]
¡û
Identical group No.663667 (22 seq.)
>W1710893721
LNFA01000260
Alphaproteobacteria
Rhizobiales bacterium Ga0077549 [LNFA]
27382
27308
-
Thr
GGT
[ENA]
¡û
>WENV181167175
OEIU01012386
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
3184
3110
-
Thr
GGT
[ENA]
¢þ
>WENV181167207
OEIU01013959
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
799
725
-
Thr
GGT
[ENA]
¢þ
>WENV181167309
OEIU01019422
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
2351
2277
-
Thr
GGT
[ENA]
¢þ
>W141278413
JAFM01000001
Alphaproteobacteria
Hyphomicrobium sp. 802 [JAFM]
1276164
1276090
-
Thr
GGT
[ENA]
¡û
>WENV170002346
AGTN01000706
[AGTN] bioreactor metagenome; poplar biomass
25
99
+
Thr
GGT
[ENA]
¢þ
>WENV170552798
CXWK01002097
[CXWK] wastewater metagenome; activated sludge
214462
214388
-
Thr
GGT
[ENA]
¢þ
>WENV170577875
FSSH01002270
[FSSH] freshwater metagenome; drinking water
48354
48280
-
Thr
GGT
[ENA]
¢þ
>WENV170709161
LNFM01000141
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
125599
125525
-
Thr
GGT
[ENA]
¢þ
>WENV170710000
LNFM01001035
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
40761
40835
+
Thr
GGT
[ENA]
¢þ
>WENV170711265
LNFM01004272
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2183
2257
+
Thr
GGT
[ENA]
¢þ
>W09135195
ACVL01000002
Alphaproteobacteria
Hyphomicrobium denitrificans ATCC 51888 [ACVL]
121031
120957
-
Thr
GGT
[ENA]
¡û
>SRA1001849
SRR001308.89703
Metagenomic characterization of a wastewater treatment plant (SRP000180)
224
150
-
Thr
GGT
[SRA]
>W1810684773
QKYU01000016
Alphaproteobacteria
Humitalea rosea DSM 24525 [QKYU]
16463
16389
-
Thr
GGT
[ENA]
¡û
>ENV09000997
ABSQ01012726
Freshwater sediment metagenome lwMethenol_C1
432
358
-
Thr
GGT
[ENA]
¡û
>W1510072659
CDHO01000003
Alphaproteobacteria
Hyphomicrobium sp. GJ21 [CDHO]
1508789
1508715
-
Thr
GGT
[ENA]
¡û
>C10107538
CP002083
Alphaproteobacteria
Hyphomicrobium denitrificans ATCC 51888 [CP002083]
2789775
2789849
+
Thr
GGT
[Ensembl]
¡û
>C11111406
FQ859181
Alphaproteobacteria
Hyphomicrobium sp. MC1 [FQ859181]
648956
648882
-
Thr
GGT
[Ensembl]
¡û
>W11181090
AGIS01000001
Alphaproteobacteria
Hyphomicrobium denitrificans 1NES1 [AGIS]
685016
684942
-
Thr
GGT
[ENA]
¡û
>C131015811
CP005587
Alphaproteobacteria
Hyphomicrobium denitrificans 1NES1 [CP005587]
2912806
2912880
+
Thr
GGT
[Ensembl]
¡û
>W1610753987
LNFA01000260
Alphaproteobacteria
Rhizobiales bacterium Ga0077549 [LNFA]
27382
27308
-
Thr
GGT
[ENA]
¡û
>W1710579340
FPCH01000001
Alphaproteobacteria
Hyphomicrobium facile [FPCH]
497995
497921
-
Thr
GGT
[ENA]
¡û
Identical group No.745846 (2 seq.)
>W1911385597
NVQB01000001
Bacteroidota
Sphingobacteriaceae bacterium SH-48 [NVQB]
4809681
4809609
-
Thr
GGT
[ENA]
¡û
>ENV09001182
ABSQ01044388
Freshwater sediment metagenome lwMethenol_C1
777
851
+
Thr
GGT
[ENA]
¡û
Identical group No.745853 (1 seq.)
>ENV09001266
ABSQ01058066
Freshwater sediment metagenome lwMethenol_C1
672
746
+
Thr
GGT
[ENA]
¡û
Identical group No.821279 (1 seq.)
>ENV09001244
ABSQ01055500
Freshwater sediment metagenome lwMethenol_C1
306
377
+
Pseudo
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK