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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwMethenol_C1
Anticodon = TAC
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.408587 (1 seq.)
>ENV09000986
ABSQ01009935
Freshwater sediment metagenome lwMethenol_C1
602
675
+
Val
TAC
[ENA]
¡û
Identical group No.604457 (1 seq.)
>ENV09000990
ABSQ01011440
Freshwater sediment metagenome lwMethenol_C1
742
667
-
Val
TAC
[ENA]
¡û
Identical group No.604470 (1 seq.)
>ENV09001046
ABSQ01021528
Freshwater sediment metagenome lwMethenol_C1
115
190
+
Val
TAC
[ENA]
¡û
Identical group No.604480 (1 seq.)
>ENV09001115
ABSQ01034571
Freshwater sediment metagenome lwMethenol_C1
896
821
-
Val
TAC
[ENA]
¡û
Identical group No.745848 (1 seq.)
>ENV09001210
ABSQ01049859
Freshwater sediment metagenome lwMethenol_C1
372
443
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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