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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwMethenol_C1
Anticodon = TCG
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.317801 (3 seq.)
>WENV181416696
OGCL01128280
[OGCL] hot springs metagenome; Hot spring water
620
544
-
Arg
TCG
[ENA]
¢þ
>WENV170563844
CZCB01031839
[CZCB] anaerobic digester metagenome; anaerobic digester
934
1010
+
Arg
TCG
[ENA]
¢þ
>ENV09001122
ABSQ01035599
Freshwater sediment metagenome lwMethenol_C1
892
816
-
Arg
TCG
[ENA]
¡û
Identical group No.408593 (3 seq.)
>WENV180270105
OBEQ012132490
[OBEQ] groundwater metagenome; groundwater
319
392
+
Arg
TCG
[ENA]
¢þ
>WENV170551810
CXWJ01024077
[CXWJ] wastewater metagenome; activated sludge
2822
2748
-
Arg
TCG
[ENA]
¢þ
>ENV09001023
ABSQ01017363
Freshwater sediment metagenome lwMethenol_C1
422
346
-
Arg
TCG
[ENA]
¡û
Identical group No.408594 (1 seq.)
>ENV09001024
ABSQ01017518
Freshwater sediment metagenome lwMethenol_C1
702
778
+
Arg
TCG
[ENA]
¡û
Identical group No.408596 (1 seq.)
>ENV09001062
ABSQ01023833
Freshwater sediment metagenome lwMethenol_C1
504
580
+
Arg
TCG
[ENA]
¡û
Identical group No.408601 (1 seq.)
>ENV09001100
ABSQ01032416
Freshwater sediment metagenome lwMethenol_C1
308
384
+
Arg
TCG
[ENA]
¡û
Identical group No.408616 (1 seq.)
>ENV09001209
ABSQ01049791
Freshwater sediment metagenome lwMethenol_C1
702
626
-
Arg
TCG
[ENA]
¡û
Identical group No.604481 (1 seq.)
>ENV09001117
ABSQ01034648
Freshwater sediment metagenome lwMethenol_C1
487
412
-
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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