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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwMethenol_C1
Anticodon = TCT
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.303519 (26 seq.)
>WENV180268199
OBEQ011939355
[OBEQ] groundwater metagenome; groundwater
8751
8675
-
Arg
TCT
[ENA]
¢þ
>WENV180283688
OBID01001649
[OBID] metagenome; sludge
3624
3548
-
Arg
TCT
[ENA]
¢þ
>WENV180693467
OCZS011263039
[OCZS] soil metagenome; soil
92
168
+
Arg
TCT
[ENA]
¢þ
>WENV181188663
OEOE01258950
[OEOE] activated sludge metagenome; Activated Sludge
44
120
+
Arg
TCT
[ENA]
¢þ
>WENV170551396
CXWJ01006596
[CXWJ] wastewater metagenome; activated sludge
7731
7807
+
Arg
TCT
[ENA]
¢þ
>WENV170554092
CXWK01046002
[CXWK] wastewater metagenome; activated sludge
1233
1157
-
Arg
TCT
[ENA]
¢þ
>WENV170555734
CXWL01001982
[CXWL] groundwater metagenome; biofilm material
7099
7023
-
Arg
TCT
[ENA]
¢þ
>WENV170555917
CXWL01003143
[CXWL] groundwater metagenome; biofilm material
2434
2358
-
Arg
TCT
[ENA]
¢þ
>WENV170556162
CXWL01005287
[CXWL] groundwater metagenome; biofilm material
150286
150210
-
Arg
TCT
[ENA]
¢þ
>WENV170556407
CXWL01008196
[CXWL] groundwater metagenome; biofilm material
7322
7246
-
Arg
TCT
[ENA]
¢þ
>WENV170556593
CXWL01010856
[CXWL] groundwater metagenome; biofilm material
9781
9857
+
Arg
TCT
[ENA]
¢þ
>WENV170556691
CXWL01012217
[CXWL] groundwater metagenome; biofilm material
779
855
+
Arg
TCT
[ENA]
¢þ
>WENV170556693
CXWL01012218
[CXWL] groundwater metagenome; biofilm material
233
309
+
Arg
TCT
[ENA]
¢þ
>WENV170556897
CXWL01015780
[CXWL] groundwater metagenome; biofilm material
77
1
-
Arg
TCT
[ENA]
¢þ
>WENV170576743
FRDC01001666
[FRDC] freshwater metagenome; water
79182
79258
+
Arg
TCT
[ENA]
¢þ
>WENV170577795
FSSH01001258
[FSSH] freshwater metagenome; drinking water
10878
10802
-
Arg
TCT
[ENA]
¢þ
>WENV170711022
LNFM01003295
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
7126
7050
-
Arg
TCT
[ENA]
¢þ
>WENV170711397
LNFM01005069
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
18619
18695
+
Arg
TCT
[ENA]
¢þ
>WENV170714587
LNFM01084054
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1540
1464
-
Arg
TCT
[ENA]
¢þ
>W1910204724
FJVM02000018
Nitrospirota
Nitrospira cf. moscoviensis SBR1015 [FJVM]
79182
79258
+
Arg
TCT
[ENA]
¡û
>W1910441949
FWEX01000003
Nitrospirota
Nitrospira sp. ND1 [FWEX]
44640
44716
+
Arg
TCT
[ENA]
¡û
>ENV09001055
ABSQ01022605
Freshwater sediment metagenome lwMethenol_C1
833
757
-
Arg
TCT
[ENA]
¡û
>W1610121145
CZPZ01000003
Nitrospirota
Candidatus Nitrospira nitrificans [CZPZ]
8233
8157
-
Arg
TCT
[ENA]
¡û
>W1610121208
CZQA01000009
Nitrospirota
Candidatus Nitrospira nitrosa [CZQA]
346401
346325
-
Arg
TCT
[ENA]
¡û
>W1710123849
CZPZ01000003
Nitrospirota
Candidatus Nitrospira nitrificans [CZPZ]
8233
8157
-
Arg
TCT
[ENA]
¡û
>W1710123912
CZQA01000009
Nitrospirota
Candidatus Nitrospira nitrosa [CZQA]
346401
346325
-
Arg
TCT
[ENA]
¡û
Identical group No.365134 (3 seq.)
>WENV180372872
OBOI01144148
[OBOI] sediment metagenome; sediment
330
254
-
Arg
TCT
[ENA]
¢þ
>ENV09000842
ABSP01048108
Freshwater sediment metagenome lwMethane_C1
289
365
+
Arg
TCT
[ENA]
¡û
>ENV09001040
ABSQ01021263
Freshwater sediment metagenome lwMethenol_C1
326
250
-
Arg
TCT
[ENA]
¡û
Identical group No.408605 (1 seq.)
>ENV09001133
ABSQ01037261
Freshwater sediment metagenome lwMethenol_C1
17
93
+
Arg
TCT
[ENA]
¡û
Identical group No.408617 (2 seq.)
>ENV09001216
ABSQ01051039
Freshwater sediment metagenome lwMethenol_C1
333
409
+
Arg
TCT
[ENA]
¡û
>ENV09001504
ABSR01019714
Freshwater sediment metagenome lwMethylamine_C1
440
516
+
Arg
TCT
[ENA]
¡û
Identical group No.580934 (2 seq.)
>WENV170574677
FLYN01003456
[FLYN] hot springs metagenome; Sediment
247
322
+
Arg
TCT
[ENA]
¢þ
>ENV09001251
ABSQ01056555
Freshwater sediment metagenome lwMethenol_C1
685
610
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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