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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwMethenol_C1
Anticodon = TGA
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.45704 (20 seq.)
>W1711224648
LXUF01000001
Betaproteobacteria
Methylovorus sp. MM2 MM1 [LXUF]
1242821
1242910
+
Ser
TGA
[ENA]
¡û
>W131164731
ARBA01000002
Betaproteobacteria
Methylotenera mobilis 13 [ARBA]
1001493
1001582
+
Ser
TGA
[ENA]
¡û
>WENV181187841
OEOE01000231
[OEOE] activated sludge metagenome; Activated Sludge
7734
7645
-
Ser
TGA
[ENA]
¢þ
>WENV181187842
OEOE01000231
[OEOE] activated sludge metagenome; Activated Sludge
5409
5320
-
Ser
TGA
[ENA]
¢þ
>WENV181189033
OEOF01000008
[OEOF] activated sludge metagenome; Activated Sludge
27582
27671
+
Ser
TGA
[ENA]
¢þ
>WENV181384264
OFRH01047775
[OFRH] wastewater metagenome; Exp Tend NO 100WW
217
306
+
Ser
TGA
[ENA]
¢þ
>WENV181400487
OFSF01008026
[OFSF] wastewater metagenome; Exp Tend VB 100WW
814
725
-
Ser
TGA
[ENA]
¢þ
>WENV181838173
OGVM01016391
[OGVM] freshwater metagenome; freshwater
392
481
+
Ser
TGA
[ENA]
¢þ
>WENV181843439
OGVU01014957
[OGVU] freshwater metagenome; freshwater
650
561
-
Ser
TGA
[ENA]
¢þ
>WENV170705501
LNAO01001121
[LNAO] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2389
2300
-
Ser
TGA
[ENA]
¢þ
>WENV170706347
LNAP01002291
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
26342
26253
-
Ser
TGA
[ENA]
¢þ
>WENV170706525
LNAP01003914
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
13976
13887
-
Ser
TGA
[ENA]
¢þ
>W141819367
JQMG01000001
Betaproteobacteria
Methylotenera sp. L2L1 [JQMG]
2138744
2138833
+
Ser
TGA
[ENA]
¡û
>W1911623986
PQVH01000008
Betaproteobacteria
Methylotenera oryzisoli La3113 [PQVH]
102575
102664
+
Ser
TGA
[ENA]
¡û
>C151104071
LN794158
Betaproteobacteria
Candidatus Methylopumilus turicensis MMS-10A-171 [LN794158]
776728
776817
+
Ser
TGA
[Ensembl]
¡û
>ENV09000949
ABSQ01001792
Freshwater sediment metagenome lwMethenol_C1
725
814
+
Ser
TGA
[ENA]
¡û
>ENV09001290
ABSR01000603
Freshwater sediment metagenome lwMethylamine_C1
956
1045
+
Ser
TGA
[ENA]
¡û
>ENV09001298
ABSR01000718
Freshwater sediment metagenome lwMethylamine_C1
648
559
-
Ser
TGA
[ENA]
¡û
>W1511433563
JUHH01000001
Betaproteobacteria
Methylotenera sp. G11 [JUHH]
513491
513402
-
Ser
TGA
[ENA]
¡û
>W1611008612
LXUF01000001
Betaproteobacteria
Methylovorus sp. MM2 MM1 [LXUF]
1242821
1242910
+
Ser
TGA
[ENA]
¡û
Identical group No.65620 (1 seq.)
>ENV09000982
ABSQ01008794
Freshwater sediment metagenome lwMethenol_C1
279
190
-
Ser
TGA
[ENA]
¡û
Identical group No.65622 (1 seq.)
>ENV09001035
ABSQ01020188
Freshwater sediment metagenome lwMethenol_C1
6
95
+
Ser
TGA
[ENA]
¡û
Identical group No.65623 (2 seq.)
>ENV09001088
ABSQ01030761
Freshwater sediment metagenome lwMethenol_C1
388
477
+
Ser
TGA
[ENA]
¡û
>ENV09001593
ABSR01034012
Freshwater sediment metagenome lwMethylamine_C1
378
465
+
Ser
TGA
[ENA]
¡û
Identical group No.65624 (1 seq.)
>ENV09001123
ABSQ01035935
Freshwater sediment metagenome lwMethenol_C1
381
292
-
Ser
TGA
[ENA]
¡û
Identical group No.65628 (1 seq.)
>ENV09001253
ABSQ01056876
Freshwater sediment metagenome lwMethenol_C1
296
207
-
Ser
TGA
[ENA]
¡û
Identical group No.105990 (2 seq.)
>W1711583541
MNXJ01000024
Chloroflexota
Anaerolineae bacterium CG2_30_57_67 [MNXJ]
34597
34682
+
Ser
TGA
[ENA]
¡û
>ENV09001090
ABSQ01031302
Freshwater sediment metagenome lwMethenol_C1
189
274
+
Ser
TGA
[ENA]
¡û
Identical group No.173208 (1 seq.)
>ENV09001242
ABSQ01055152
Freshwater sediment metagenome lwMethenol_C1
163
248
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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