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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwMethenol_C1
Anticodon = TGT
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.455356 (61 seq.)
>W1711223918
LXTQ01000020
Betaproteobacteria
Methylobacillus sp. MM3 MM2 [LXTQ]
294312
294387
+
Thr
TGT
[ENA]
¡û
>W1711224665
LXUF01000011
Betaproteobacteria
Methylovorus sp. MM2 MM1 [LXUF]
394688
394613
-
Thr
TGT
[ENA]
¡û
>W1711339983
MCAW01000002
Betaproteobacteria
Methylophilales bacterium LSUCC0135 [MCAW]
872
797
-
Thr
TGT
[ENA]
¡û
>W131186209
ARVX01000001
Betaproteobacteria
Methylotenera versatilis 79 [ARVX]
508550
508475
-
Thr
TGT
[ENA]
¡û
>W131186571
ARWF01000001
Betaproteobacteria
Methylotenera sp. 73s [ARWF]
1388025
1387950
-
Thr
TGT
[ENA]
¡û
>C013374
CP000284
Betaproteobacteria
Methylobacillus flagellatus KT [CP000284]
269603
269678
+
Thr
TGT
[Ensembl]
¡û
>WENV180110969
OAPN01018187
[OAPN] marine metagenome; 2011
551
476
-
Thr
TGT
[ENA]
¢þ
>WENV181187992
OEOE01009820
[OEOE] activated sludge metagenome; Activated Sludge
277
202
-
Thr
TGT
[ENA]
¢þ
>WENV181189069
OEOF01000207
[OEOF] activated sludge metagenome; Activated Sludge
9835
9910
+
Thr
TGT
[ENA]
¢þ
>WENV181368863
OFQN01002171
[OFQN] freshwater metagenome; Freshwater Lake
922
997
+
Thr
TGT
[ENA]
¢þ
>WENV181369620
OFQP01012984
[OFQP] freshwater metagenome; Freshwater Lake
455
380
-
Thr
TGT
[ENA]
¢þ
>WENV181377303
OFRA01006710
[OFRA] wastewater metagenome; Lake Maggiore Verbania
1710
1785
+
Thr
TGT
[ENA]
¢þ
>WENV181379603
OFRD01003940
[OFRD] wastewater metagenome; Exp Tend CN 100WW
798
873
+
Thr
TGT
[ENA]
¢þ
>WENV181399928
OFSF01000325
[OFSF] wastewater metagenome; Exp Tend VB 100WW
1857
1932
+
Thr
TGT
[ENA]
¢þ
>WENV181835648
OGVI01007666
[OGVI] freshwater metagenome; freshwater
225
300
+
Thr
TGT
[ENA]
¢þ
>WENV181836425
OGVJ01006729
[OGVJ] freshwater metagenome; freshwater
1164
1239
+
Thr
TGT
[ENA]
¢þ
>WENV181841618
OGVS01001779
[OGVS] freshwater metagenome; freshwater
1258
1183
-
Thr
TGT
[ENA]
¢þ
>WENV181843398
OGVU01012211
[OGVU] freshwater metagenome; freshwater
45
120
+
Thr
TGT
[ENA]
¢þ
>WENV181843425
OGVU01014240
[OGVU] freshwater metagenome; freshwater
96
171
+
Thr
TGT
[ENA]
¢þ
>WENV181843597
OGVU01033066
[OGVU] freshwater metagenome; freshwater
408
483
+
Thr
TGT
[ENA]
¢þ
>W141229544
BAMT01000006
Betaproteobacteria
Methylobacillus glycogenes JCM 2850 [BAMT]
189607
189682
+
Thr
TGT
[ENA]
¡û
>WENV183726675
PJTO01000064
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
163820
163895
+
Thr
TGT
[ENA]
¢þ
>WENV183736828
PJUD01000046
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
618
543
-
Thr
TGT
[ENA]
¢þ
>WENV183739277
PJUE01005794
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
1759
1834
+
Thr
TGT
[ENA]
¢þ
>WENV183740614
PJUF01004516
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
1213
1288
+
Thr
TGT
[ENA]
¢þ
>WENV170000148
AERA01017287
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
14
89
+
Thr
TGT
[ENA]
¢þ
>WENV170559044
CXWL01107736
[CXWL] groundwater metagenome; biofilm material
11076
11151
+
Thr
TGT
[ENA]
¢þ
>WENV170602791
FUWD010263900
[FUWD] metagenome; unknown
448
523
+
Thr
TGT
[ENA]
¢þ
>WENV170654535
JRYL01000222
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
195422
195497
+
Thr
TGT
[ENA]
¢þ
>WENV170654801
JRYL01023830
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
2509
2584
+
Thr
TGT
[ENA]
¢þ
>WENV170705834
LNAP01000436
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
27627
27552
-
Thr
TGT
[ENA]
¢þ
>WENV170705925
LNAP01000645
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
23258
23183
-
Thr
TGT
[ENA]
¢þ
>WENV170708461
LNAP01084187
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
779
704
-
Thr
TGT
[ENA]
¢þ
>WENV170708752
LNAQ01000549
[LNAQ] soil metagenome; soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
8953
8878
-
Thr
TGT
[ENA]
¢þ
>WENV170708772
LNAQ01000945
[LNAQ] soil metagenome; soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2506
2431
-
Thr
TGT
[ENA]
¢þ
>WENV170708814
LNAQ01001462
[LNAQ] soil metagenome; soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
511
436
-
Thr
TGT
[ENA]
¢þ
>WENV170961318
MLJW01000004
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
152082
152007
-
Thr
TGT
[ENA]
¢þ
>WENV170961456
MLJW01000054
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
42125
42050
-
Thr
TGT
[ENA]
¢þ
>W09101036
AADX02000024
Betaproteobacteria
Methylobacillus flagellatus KT [AADX]
13502
13427
-
Thr
TGT
[ENA]
¡û
>W1910547745
FZOA01000004
Betaproteobacteria
Methylobacillus rhizosphaerae Ca-68 [FZOA]
1682
1607
-
Thr
TGT
[ENA]
¡û
>W1910730028
MHBU01000022
Betaproteobacteria
Methylotenera sp. RIFCSPLOWO2_02_FULL_45_14 [MHBU]
119905
119980
+
Thr
TGT
[ENA]
¡û
>C151104234
LN827929
Betaproteobacteria
Candidatus Methylopumilus planktonicus MMS-10A-171 [LN827929]
183156
183231
+
Thr
TGT
[Ensembl]
¡û
>ENV09000086
ABSN01006905
Freshwater sediment metagenome lwFormaldehyde_C1
354
279
-
Thr
TGT
[ENA]
¡û
>ENV09000119
ABSN01014228
Freshwater sediment metagenome lwFormaldehyde_C1
369
294
-
Thr
TGT
[ENA]
¡û
>ENV09000763
ABSP01031748
Freshwater sediment metagenome lwMethane_C1
627
702
+
Thr
TGT
[ENA]
¡û
>ENV09001042
ABSQ01021434
Freshwater sediment metagenome lwMethenol_C1
588
513
-
Thr
TGT
[ENA]
¡û
>ENV09001440
ABSR01008649
Freshwater sediment metagenome lwMethylamine_C1
202
127
-
Thr
TGT
[ENA]
¡û
>ENV09001470
ABSR01013362
Freshwater sediment metagenome lwMethylamine_C1
585
510
-
Thr
TGT
[ENA]
¡û
>C10109339
CP002056
Betaproteobacteria
Methylotenera versatilis 301 [CP002056]
357226
357301
+
Thr
TGT
[Ensembl]
¡û
>C10109360
CP002056
Betaproteobacteria
Methylotenera versatilis 301 [CP002056]
2956225
2956150
-
Thr
TGT
[Ensembl]
¡û
>WENV11100506
AERA01017287
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
14
89
+
Thr
TGT
[ENA]
¡û
>W1511432018
JUGF01000002
Betaproteobacteria
Methylotenera versatilis 7 [JUGF]
1010489
1010564
+
Thr
TGT
[ENA]
¡û
>W1511433535
JUHH01000001
Betaproteobacteria
Methylotenera sp. G11 [JUHH]
1963292
1963367
+
Thr
TGT
[ENA]
¡û
>W1511433536
JUHH01000001
Betaproteobacteria
Methylotenera sp. G11 [JUHH]
2157709
2157784
+
Thr
TGT
[ENA]
¡û
>WENV047215
AACY022647211
Marine microbial communities from Global Ocean Sampling (GOS)
538
613
+
Thr
TGT
[ENA]
>WENV058925
AACY023347323
Marine microbial communities from Global Ocean Sampling (GOS)
578
653
+
Thr
TGT
[ENA]
>WENV006639
AACY020177457
Marine microbial communities from Global Ocean Sampling (GOS)
545
470
-
Thr
TGT
[ENA]
>WENV006795
AACY020179772
Marine microbial communities from Global Ocean Sampling (GOS)
78
153
+
Thr
TGT
[ENA]
>WENV074553
AACY023982648
Marine microbial communities from Global Ocean Sampling (GOS)
843
768
-
Thr
TGT
[ENA]
>W1611008289
LXTQ01000020
Betaproteobacteria
Methylobacillus sp. MM3 MM2 [LXTQ]
294312
294387
+
Thr
TGT
[ENA]
¡û
>W1611008629
LXUF01000011
Betaproteobacteria
Methylovorus sp. MM2 MM1 [LXUF]
394688
394613
-
Thr
TGT
[ENA]
¡û
Identical group No.494365 (4 seq.)
>WENV180691658
OCZS010176996
[OCZS] soil metagenome; soil
572
497
-
Thr
TGT
[ENA]
¢þ
>WENV183678222
ORJL011850856
[ORJL] groundwater metagenome; groundwater
415
340
-
Thr
TGT
[ENA]
¢þ
>ENV09000712
ABSP01021502
Freshwater sediment metagenome lwMethane_C1
195
120
-
Thr
TGT
[ENA]
¡û
>ENV09001186
ABSQ01045051
Freshwater sediment metagenome lwMethenol_C1
699
774
+
Thr
TGT
[ENA]
¡û
Identical group No.547906 (3 seq.)
>WENV170606511
FUWD010676931
[FUWD] metagenome; unknown
622
695
+
Thr
TGT
[ENA]
¢þ
>ENV09000212
ABSN01031530
Freshwater sediment metagenome lwFormaldehyde_C1
547
474
-
Thr
TGT
[ENA]
¡û
>ENV09001179
ABSQ01044388
Freshwater sediment metagenome lwMethenol_C1
266
339
+
Thr
TGT
[ENA]
¡û
Identical group No.745833 (1 seq.)
>ENV09001005
ABSQ01014427
Freshwater sediment metagenome lwMethenol_C1
154
83
-
Thr
TGT
[ENA]
¡û
Identical group No.745841 (1 seq.)
>ENV09001128
ABSQ01036855
Freshwater sediment metagenome lwMethenol_C1
356
430
+
Thr
TGT
[ENA]
¡û
Identical group No.745843 (1 seq.)
>ENV09001155
ABSQ01040215
Freshwater sediment metagenome lwMethenol_C1
428
502
+
Thr
TGT
[ENA]
¡û
Identical group No.745850 (2 seq.)
>ENV09001236
ABSQ01054841
Freshwater sediment metagenome lwMethenol_C1
437
363
-
Thr
TGT
[ENA]
¡û
>C161040275
CP012157
Betaproteobacteria
Betaproteobacteria bacterium UKL13-2 [CP012157]
664753
664679
-
Thr
TGT
-
¡û
Identical group No.821273 (1 seq.)
>ENV09001068
ABSQ01025093
Freshwater sediment metagenome lwMethenol_C1
774
701
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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