tRNA genes clustered and arranged according to each identical group

Freshwater sediment metagenome lwMethenol_C1

Anticodon = TGT

HIT: 8 Group(s).
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Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.455356 (61 seq.)
>W1711223918 LXTQ01000020 Betaproteobacteria Methylobacillus sp. MM3 MM2 [LXTQ] 294312 294387 + Thr TGT [ENA] ¡û
>W1711224665 LXUF01000011 Betaproteobacteria Methylovorus sp. MM2 MM1 [LXUF] 394688 394613 - Thr TGT [ENA] ¡û
>W1711339983 MCAW01000002 Betaproteobacteria Methylophilales bacterium LSUCC0135 [MCAW] 872 797 - Thr TGT [ENA] ¡û
>W131186209 ARVX01000001 Betaproteobacteria Methylotenera versatilis 79 [ARVX] 508550 508475 - Thr TGT [ENA] ¡û
>W131186571 ARWF01000001 Betaproteobacteria Methylotenera sp. 73s [ARWF] 1388025 1387950 - Thr TGT [ENA] ¡û
>C013374 CP000284 Betaproteobacteria Methylobacillus flagellatus KT [CP000284] 269603 269678 + Thr TGT [Ensembl] ¡û
>WENV180110969 OAPN01018187 [OAPN] marine metagenome; 2011 551 476 - Thr TGT [ENA] ¢þ
>WENV181187992 OEOE01009820 [OEOE] activated sludge metagenome; Activated Sludge 277 202 - Thr TGT [ENA] ¢þ
>WENV181189069 OEOF01000207 [OEOF] activated sludge metagenome; Activated Sludge 9835 9910 + Thr TGT [ENA] ¢þ
>WENV181368863 OFQN01002171 [OFQN] freshwater metagenome; Freshwater Lake 922 997 + Thr TGT [ENA] ¢þ
>WENV181369620 OFQP01012984 [OFQP] freshwater metagenome; Freshwater Lake 455 380 - Thr TGT [ENA] ¢þ
>WENV181377303 OFRA01006710 [OFRA] wastewater metagenome; Lake Maggiore Verbania 1710 1785 + Thr TGT [ENA] ¢þ
>WENV181379603 OFRD01003940 [OFRD] wastewater metagenome; Exp Tend CN 100WW 798 873 + Thr TGT [ENA] ¢þ
>WENV181399928 OFSF01000325 [OFSF] wastewater metagenome; Exp Tend VB 100WW 1857 1932 + Thr TGT [ENA] ¢þ
>WENV181835648 OGVI01007666 [OGVI] freshwater metagenome; freshwater 225 300 + Thr TGT [ENA] ¢þ
>WENV181836425 OGVJ01006729 [OGVJ] freshwater metagenome; freshwater 1164 1239 + Thr TGT [ENA] ¢þ
>WENV181841618 OGVS01001779 [OGVS] freshwater metagenome; freshwater 1258 1183 - Thr TGT [ENA] ¢þ
>WENV181843398 OGVU01012211 [OGVU] freshwater metagenome; freshwater 45 120 + Thr TGT [ENA] ¢þ
>WENV181843425 OGVU01014240 [OGVU] freshwater metagenome; freshwater 96 171 + Thr TGT [ENA] ¢þ
>WENV181843597 OGVU01033066 [OGVU] freshwater metagenome; freshwater 408 483 + Thr TGT [ENA] ¢þ
>W141229544 BAMT01000006 Betaproteobacteria Methylobacillus glycogenes JCM 2850 [BAMT] 189607 189682 + Thr TGT [ENA] ¡û
>WENV183726675 PJTO01000064 [PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment 163820 163895 + Thr TGT [ENA] ¢þ
>WENV183736828 PJUD01000046 [PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment 618 543 - Thr TGT [ENA] ¢þ
>WENV183739277 PJUE01005794 [PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment 1759 1834 + Thr TGT [ENA] ¢þ
>WENV183740614 PJUF01004516 [PJUF] feces metagenome; Chicken feces (3) enriched on wood chips 1213 1288 + Thr TGT [ENA] ¢þ
>WENV170000148 AERA01017287 [AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant 14 89 + Thr TGT [ENA] ¢þ
>WENV170559044 CXWL01107736 [CXWL] groundwater metagenome; biofilm material 11076 11151 + Thr TGT [ENA] ¢þ
>WENV170602791 FUWD010263900 [FUWD] metagenome; unknown 448 523 + Thr TGT [ENA] ¢þ
>WENV170654535 JRYL01000222 [JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different 195422 195497 + Thr TGT [ENA] ¢þ
>WENV170654801 JRYL01023830 [JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different 2509 2584 + Thr TGT [ENA] ¢þ
>WENV170705834 LNAP01000436 [LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with 27627 27552 - Thr TGT [ENA] ¢þ
>WENV170705925 LNAP01000645 [LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with 23258 23183 - Thr TGT [ENA] ¢þ
>WENV170708461 LNAP01084187 [LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with 779 704 - Thr TGT [ENA] ¢þ
>WENV170708752 LNAQ01000549 [LNAQ] soil metagenome; soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with 8953 8878 - Thr TGT [ENA] ¢þ
>WENV170708772 LNAQ01000945 [LNAQ] soil metagenome; soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with 2506 2431 - Thr TGT [ENA] ¢þ
>WENV170708814 LNAQ01001462 [LNAQ] soil metagenome; soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with 511 436 - Thr TGT [ENA] ¢þ
>WENV170961318 MLJW01000004 [MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for 152082 152007 - Thr TGT [ENA] ¢þ
>WENV170961456 MLJW01000054 [MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for 42125 42050 - Thr TGT [ENA] ¢þ
>W09101036 AADX02000024 Betaproteobacteria Methylobacillus flagellatus KT [AADX] 13502 13427 - Thr TGT [ENA] ¡û
>W1910547745 FZOA01000004 Betaproteobacteria Methylobacillus rhizosphaerae Ca-68 [FZOA] 1682 1607 - Thr TGT [ENA] ¡û
>W1910730028 MHBU01000022 Betaproteobacteria Methylotenera sp. RIFCSPLOWO2_02_FULL_45_14 [MHBU] 119905 119980 + Thr TGT [ENA] ¡û
>C151104234 LN827929 Betaproteobacteria Candidatus Methylopumilus planktonicus MMS-10A-171 [LN827929] 183156 183231 + Thr TGT [Ensembl] ¡û
>ENV09000086 ABSN01006905 Freshwater sediment metagenome lwFormaldehyde_C1 354 279 - Thr TGT [ENA] ¡û
>ENV09000119 ABSN01014228 Freshwater sediment metagenome lwFormaldehyde_C1 369 294 - Thr TGT [ENA] ¡û
>ENV09000763 ABSP01031748 Freshwater sediment metagenome lwMethane_C1 627 702 + Thr TGT [ENA] ¡û
>ENV09001042 ABSQ01021434 Freshwater sediment metagenome lwMethenol_C1 588 513 - Thr TGT [ENA] ¡û
>ENV09001440 ABSR01008649 Freshwater sediment metagenome lwMethylamine_C1 202 127 - Thr TGT [ENA] ¡û
>ENV09001470 ABSR01013362 Freshwater sediment metagenome lwMethylamine_C1 585 510 - Thr TGT [ENA] ¡û
>C10109339 CP002056 Betaproteobacteria Methylotenera versatilis 301 [CP002056] 357226 357301 + Thr TGT [Ensembl] ¡û
>C10109360 CP002056 Betaproteobacteria Methylotenera versatilis 301 [CP002056] 2956225 2956150 - Thr TGT [Ensembl] ¡û
>WENV11100506 AERA01017287 [AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant 14 89 + Thr TGT [ENA] ¡û
>W1511432018 JUGF01000002 Betaproteobacteria Methylotenera versatilis 7 [JUGF] 1010489 1010564 + Thr TGT [ENA] ¡û
>W1511433535 JUHH01000001 Betaproteobacteria Methylotenera sp. G11 [JUHH] 1963292 1963367 + Thr TGT [ENA] ¡û
>W1511433536 JUHH01000001 Betaproteobacteria Methylotenera sp. G11 [JUHH] 2157709 2157784 + Thr TGT [ENA] ¡û
>WENV047215 AACY022647211 Marine microbial communities from Global Ocean Sampling (GOS) 538 613 + Thr TGT [ENA]
>WENV058925 AACY023347323 Marine microbial communities from Global Ocean Sampling (GOS) 578 653 + Thr TGT [ENA]
>WENV006639 AACY020177457 Marine microbial communities from Global Ocean Sampling (GOS) 545 470 - Thr TGT [ENA]
>WENV006795 AACY020179772 Marine microbial communities from Global Ocean Sampling (GOS) 78 153 + Thr TGT [ENA]
>WENV074553 AACY023982648 Marine microbial communities from Global Ocean Sampling (GOS) 843 768 - Thr TGT [ENA]
>W1611008289 LXTQ01000020 Betaproteobacteria Methylobacillus sp. MM3 MM2 [LXTQ] 294312 294387 + Thr TGT [ENA] ¡û
>W1611008629 LXUF01000011 Betaproteobacteria Methylovorus sp. MM2 MM1 [LXUF] 394688 394613 - Thr TGT [ENA] ¡û
Identical group No.494365 (4 seq.)
>WENV180691658 OCZS010176996 [OCZS] soil metagenome; soil 572 497 - Thr TGT [ENA] ¢þ
>WENV183678222 ORJL011850856 [ORJL] groundwater metagenome; groundwater 415 340 - Thr TGT [ENA] ¢þ
>ENV09000712 ABSP01021502 Freshwater sediment metagenome lwMethane_C1 195 120 - Thr TGT [ENA] ¡û
>ENV09001186 ABSQ01045051 Freshwater sediment metagenome lwMethenol_C1 699 774 + Thr TGT [ENA] ¡û
Identical group No.547906 (3 seq.)
>WENV170606511 FUWD010676931 [FUWD] metagenome; unknown 622 695 + Thr TGT [ENA] ¢þ
>ENV09000212 ABSN01031530 Freshwater sediment metagenome lwFormaldehyde_C1 547 474 - Thr TGT [ENA] ¡û
>ENV09001179 ABSQ01044388 Freshwater sediment metagenome lwMethenol_C1 266 339 + Thr TGT [ENA] ¡û
Identical group No.745833 (1 seq.)
>ENV09001005 ABSQ01014427 Freshwater sediment metagenome lwMethenol_C1 154 83 - Thr TGT [ENA] ¡û
Identical group No.745841 (1 seq.)
>ENV09001128 ABSQ01036855 Freshwater sediment metagenome lwMethenol_C1 356 430 + Thr TGT [ENA] ¡û
Identical group No.745843 (1 seq.)
>ENV09001155 ABSQ01040215 Freshwater sediment metagenome lwMethenol_C1 428 502 + Thr TGT [ENA] ¡û
Identical group No.745850 (2 seq.)
>ENV09001236 ABSQ01054841 Freshwater sediment metagenome lwMethenol_C1 437 363 - Thr TGT [ENA] ¡û
>C161040275 CP012157 Betaproteobacteria Betaproteobacteria bacterium UKL13-2 [CP012157] 664753 664679 - Thr TGT - ¡û
Identical group No.821273 (1 seq.)
>ENV09001068 ABSQ01025093 Freshwater sediment metagenome lwMethenol_C1 774 701 - Thr TGT [ENA] ¡û
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

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