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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwMethylamine_C1
Anticodon = CAA
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.71227 (1 seq.)
>ENV09001582
ABSR01033311
Freshwater sediment metagenome lwMethylamine_C1
381
292
-
Leu
CAA
[ENA]
¡û
Identical group No.151363 (2 seq.)
>ENV09001514
ABSR01022651
Freshwater sediment metagenome lwMethylamine_C1
642
728
+
Leu
CAA
[ENA]
¡û
>W1511433540
JUHH01000001
Betaproteobacteria
Methylotenera sp. G11 [JUHH]
2268315
2268401
+
Leu
CAA
[ENA]
¡û
Identical group No.185669 (14 seq.)
>WENV180391239
OBPM01051198
[OBPM] marine metagenome; ENVO:00002010
134
218
+
Leu
CAA
[ENA]
¢þ
>WENV181835567
OGVI01003593
[OGVI] freshwater metagenome; freshwater
306
390
+
Leu
CAA
[ENA]
¢þ
>WENV170621592
FUWD013064552
[FUWD] metagenome; unknown
1040
956
-
Leu
CAA
[ENA]
¢þ
>WENV170629774
FUWD013280555
[FUWD] metagenome; unknown
1040
956
-
Leu
CAA
[ENA]
¢þ
>WENV170689322
LFRM01288780
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
87
3
-
Leu
CAA
[ENA]
¢þ
>WENV170706837
LNAP01007461
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
131
47
-
Leu
CAA
[ENA]
¢þ
>W1910888823
NESD01000001
Betaproteobacteria
Limnohabitans sp. Jir61 [NESD]
325127
325043
-
Leu
CAA
[ENA]
¡û
>W1910889254
NESO01000001
Betaproteobacteria
Limnohabitans sp. Rim8 [NESO]
293561
293645
+
Leu
CAA
[ENA]
¡û
>W1910889297
NESP01000001
Betaproteobacteria
Limnohabitans curvus MWH-C5 [NESP]
831449
831533
+
Leu
CAA
[ENA]
¡û
>W1810305881
PTQX01000018
Betaproteobacteria
Limnohabitans sp. TS-CS-82 [PTQX]
3014
3098
+
Leu
CAA
[ENA]
¡û
>ENV09001469
ABSR01013337
Freshwater sediment metagenome lwMethylamine_C1
502
418
-
Leu
CAA
[ENA]
¡û
>C11118200
CP002663
Betaproteobacteria
Pusillimonas sp. T7-7 [CP002663]
2340762
2340846
+
Leu
CAA
[Ensembl]
¡û
>WENV057258
AACY023289555
Marine microbial communities from Global Ocean Sampling (GOS)
916
830
-
Leu
CAA
[ENA]
>W1710557390
FOKZ01000003
Betaproteobacteria
Polaromonas sp. OV174 [FOKZ]
193948
194032
+
Leu
CAA
[ENA]
¡û
Identical group No.190898 (11 seq.)
>W131164755
ARBA01000003
Betaproteobacteria
Methylotenera mobilis 13 [ARBA]
412213
412129
-
Leu
CAA
[ENA]
¡û
>WENV170706427
LNAP01003094
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
36358
36442
+
Leu
CAA
[ENA]
¢þ
>WENV170706926
LNAP01009090
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
16400
16316
-
Leu
CAA
[ENA]
¢þ
>W141819358
JQMG01000001
Betaproteobacteria
Methylotenera sp. L2L1 [JQMG]
1359131
1359215
+
Leu
CAA
[ENA]
¡û
>C09107786
CP001672
Betaproteobacteria
Methylotenera mobilis JLW8 [CP001672]
480062
480146
+
Leu
CAA
[Ensembl]
¡û
>W1911623994
PQVH01000009
Betaproteobacteria
Methylotenera oryzisoli La3113 [PQVH]
22144
22060
-
Leu
CAA
[ENA]
¡û
>ENV09001275
ABSR01000090
Freshwater sediment metagenome lwMethylamine_C1
2173
2257
+
Leu
CAA
[ENA]
¡û
>ENV09001355
ABSR01002838
Freshwater sediment metagenome lwMethylamine_C1
787
871
+
Leu
CAA
[ENA]
¡û
>ENV09001420
ABSR01006307
Freshwater sediment metagenome lwMethylamine_C1
2121
2205
+
Leu
CAA
[ENA]
¡û
>ENV09001423
ABSR01006501
Freshwater sediment metagenome lwMethylamine_C1
3313
3229
-
Leu
CAA
[ENA]
¡û
>ENV09001434
ABSR01007178
Freshwater sediment metagenome lwMethylamine_C1
659
743
+
Leu
CAA
[ENA]
¡û
Identical group No.215872 (1 seq.)
>ENV09001360
ABSR01002955
Freshwater sediment metagenome lwMethylamine_C1
1284
1200
-
Leu
CAA
[ENA]
¡û
Identical group No.215875 (1 seq.)
>ENV09001583
ABSR01033347
Freshwater sediment metagenome lwMethylamine_C1
814
730
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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