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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwMethylamine_C1
Anticodon = CAG
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.86009 (1 seq.)
>ENV09001551
ABSR01027608
Freshwater sediment metagenome lwMethylamine_C1
401
315
-
Leu
CAG
[ENA]
¡û
Identical group No.132203 (2 seq.)
>ENV09001438
ABSR01008227
Freshwater sediment metagenome lwMethylamine_C1
514
600
+
Leu
CAG
[ENA]
¡û
>WENV077888
AAFX01119029
Soil microbial communities from Minnesota Farm
597
509
-
Leu
CAG
[ENA]
Identical group No.198283 (7 seq.)
>WENV181364871
OFPE01008620
[OFPE] sediment metagenome; Lake sediment
123
39
-
Leu
CAG
[ENA]
¢þ
>WENV181364971
OFPG01002906
[OFPG] sediment metagenome; Lake sediment
213
129
-
Leu
CAG
[ENA]
¢þ
>WENV170559583
CXWL01131203
[CXWL] groundwater metagenome; biofilm material
638
554
-
Leu
CAG
[ENA]
¢þ
>WENV170622663
FUWD013115596
[FUWD] metagenome; unknown
532
616
+
Leu
CAG
[ENA]
¢þ
>WENV170630877
FUWD013329399
[FUWD] metagenome; unknown
532
616
+
Leu
CAG
[ENA]
¢þ
>ENV09001463
ABSR01012140
Freshwater sediment metagenome lwMethylamine_C1
590
674
+
Leu
CAG
[ENA]
¡û
>C10109373
CP002056
Betaproteobacteria
Methylotenera versatilis 301 [CP002056]
1407738
1407654
-
Leu
CAG
[Ensembl]
¡û
Identical group No.198977 (4 seq.)
>WENV170705802
LNAP01000352
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
88742
88826
+
Leu
CAG
[ENA]
¢þ
>WENV170706082
LNAP01001056
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
29818
29902
+
Leu
CAG
[ENA]
¢þ
>ENV09001572
ABSR01032301
Freshwater sediment metagenome lwMethylamine_C1
578
662
+
Leu
CAG
[ENA]
¡û
>W1511433567
JUHH01000001
Betaproteobacteria
Methylotenera sp. G11 [JUHH]
428229
428145
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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