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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwMethylamine_C1
Anticodon = CCT
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.472868 (26 seq.)
>W1711223897
LXTQ01000001
Betaproteobacteria
Methylobacillus sp. MM3 MM2 [LXTQ]
508942
509017
+
Arg
CCT
[ENA]
¡û
>W1711340005
MCAW01000012
Betaproteobacteria
Methylophilales bacterium LSUCC0135 [MCAW]
1460
1385
-
Arg
CCT
[ENA]
¡û
>W1711387316
MEGN01000002
Betaproteobacteria
Thiobacillus sp. SCN 65-179 [MEGN]
228311
228386
+
Arg
CCT
[ENA]
¡û
>W131186189
ARVX01000001
Betaproteobacteria
Methylotenera versatilis 79 [ARVX]
1744879
1744954
+
Arg
CCT
[ENA]
¡û
>W131186548
ARWF01000001
Betaproteobacteria
Methylotenera sp. 73s [ARWF]
15577
15652
+
Arg
CCT
[ENA]
¡û
>W1711504077
MKUF01000008
Betaproteobacteria
Thiobacillus sp. 65-69 [MKUF]
89495
89420
-
Arg
CCT
[ENA]
¡û
>WENV180014751
FQKF010124779
[FQKF] soil metagenome; Soil
134
59
-
Arg
CCT
[ENA]
¢þ
>WENV180311810
OBJT01590345
[OBJT] soil metagenome; soil
98
23
-
Arg
CCT
[ENA]
¢þ
>WENV180350783
OBLQ010010896
[OBLQ] soil metagenome; soil
730
655
-
Arg
CCT
[ENA]
¢þ
>WENV181187816
OEOE01000034
[OEOE] activated sludge metagenome; Activated Sludge
17432
17507
+
Arg
CCT
[ENA]
¢þ
>WENV181187824
OEOE01000062
[OEOE] activated sludge metagenome; Activated Sludge
1
76
+
Arg
CCT
[ENA]
¢þ
>WENV181189112
OEOF01000890
[OEOF] activated sludge metagenome; Activated Sludge
2620
2695
+
Arg
CCT
[ENA]
¢þ
>WENV181189192
OEOF01006568
[OEOF] activated sludge metagenome; Activated Sludge
217
142
-
Arg
CCT
[ENA]
¢þ
>WENV181411738
OGCI01042296
[OGCI] hot springs metagenome; Hot spring water
863
788
-
Arg
CCT
[ENA]
¢þ
>WENV181415365
OGCL01009051
[OGCL] hot springs metagenome; Hot spring water
132
207
+
Arg
CCT
[ENA]
¢þ
>WENV181415957
OGCL01038554
[OGCL] hot springs metagenome; Hot spring water
1325
1250
-
Arg
CCT
[ENA]
¢þ
>WENV181838878
OGVN01029411
[OGVN] freshwater metagenome; freshwater
115
40
-
Arg
CCT
[ENA]
¢þ
>WENV181843372
OGVU01011262
[OGVU] freshwater metagenome; freshwater
411
486
+
Arg
CCT
[ENA]
¢þ
>WENV181851272
OGWE01018635
[OGWE] freshwater metagenome; freshwater
226
301
+
Arg
CCT
[ENA]
¢þ
>WENV181857409
OGWO01004092
[OGWO] freshwater metagenome; freshwater
1180
1105
-
Arg
CCT
[ENA]
¢þ
>WENV170566491
FKKE01036510
[FKKE] freshwater metagenome; freshwater
265
340
+
Arg
CCT
[ENA]
¢þ
>W141819365
JQMG01000001
Betaproteobacteria
Methylotenera sp. L2L1 [JQMG]
2020847
2020922
+
Arg
CCT
[ENA]
¡û
>ENV09001487
ABSR01016747
Freshwater sediment metagenome lwMethylamine_C1
507
582
+
Arg
CCT
[ENA]
¡û
>W1511431972
JUGE01000001
Betaproteobacteria
Methylotenera sp. N17 [JUGE]
545256
545331
+
Arg
CCT
[ENA]
¡û
>W1511433561
JUHH01000001
Betaproteobacteria
Methylotenera sp. G11 [JUHH]
653875
653800
-
Arg
CCT
[ENA]
¡û
>W1611008268
LXTQ01000001
Betaproteobacteria
Methylobacillus sp. MM3 MM2 [LXTQ]
508942
509017
+
Arg
CCT
[ENA]
¡û
Identical group No.548149 (17 seq.)
>W131164729
ARBA01000002
Betaproteobacteria
Methylotenera mobilis 13 [ARBA]
890813
890888
+
Arg
CCT
[ENA]
¡û
>WENV180391161
OBPM01024973
[OBPM] marine metagenome; ENVO:00002010
148
223
+
Arg
CCT
[ENA]
¢þ
>WENV181380041
OFRD01023400
[OFRD] wastewater metagenome; Exp Tend CN 100WW
412
337
-
Arg
CCT
[ENA]
¢þ
>WENV181384242
OFRH01042793
[OFRH] wastewater metagenome; Exp Tend NO 100WW
124
199
+
Arg
CCT
[ENA]
¢þ
>WENV170609723
FUWD011478836
[FUWD] metagenome; unknown
72
147
+
Arg
CCT
[ENA]
¢þ
>WENV170639360
JFJP01002048
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
15086
15161
+
Arg
CCT
[ENA]
¢þ
>WENV170639575
JFJP01004934
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
794
719
-
Arg
CCT
[ENA]
¢þ
>WENV170706181
LNAP01001558
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
15143
15068
-
Arg
CCT
[ENA]
¢þ
>WENV170706375
LNAP01002622
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
512
437
-
Arg
CCT
[ENA]
¢þ
>WENV170961785
MLJW01001278
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
3282
3357
+
Arg
CCT
[ENA]
¢þ
>WENV170961928
MLJW01007643
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
19
94
+
Arg
CCT
[ENA]
¢þ
>W1910730032
MHBU01000024
Betaproteobacteria
Methylotenera sp. RIFCSPLOWO2_02_FULL_45_14 [MHBU]
109766
109841
+
Arg
CCT
[ENA]
¡û
>W1911623984
PQVH01000008
Betaproteobacteria
Methylotenera oryzisoli La3113 [PQVH]
15405
15480
+
Arg
CCT
[ENA]
¡û
>ENV09000770
ABSP01032944
Freshwater sediment metagenome lwMethane_C1
412
337
-
Arg
CCT
[ENA]
¡û
>ENV09001394
ABSR01004584
Freshwater sediment metagenome lwMethylamine_C1
4142
4067
-
Arg
CCT
[ENA]
¡û
>ENV09001511
ABSR01021395
Freshwater sediment metagenome lwMethylamine_C1
675
600
-
Arg
CCT
[ENA]
¡û
>C10109350
CP002056
Betaproteobacteria
Methylotenera versatilis 301 [CP002056]
985747
985822
+
Arg
CCT
[Ensembl]
¡û
Identical group No.608151 (16 seq.)
>WENV183660504
ORJL010028059
[ORJL] groundwater metagenome; groundwater
356
281
-
Arg
CCT
[ENA]
¢þ
>WENV183665347
ORJL010460640
[ORJL] groundwater metagenome; groundwater
317
392
+
Arg
CCT
[ENA]
¢þ
>WENV183668085
ORJL010710458
[ORJL] groundwater metagenome; groundwater
1703
1628
-
Arg
CCT
[ENA]
¢þ
>WENV183668409
ORJL010737770
[ORJL] groundwater metagenome; groundwater
20745
20820
+
Arg
CCT
[ENA]
¢þ
>WENV183669978
ORJL010894825
[ORJL] groundwater metagenome; groundwater
364
289
-
Arg
CCT
[ENA]
¢þ
>WENV183674533
ORJL011399995
[ORJL] groundwater metagenome; groundwater
71
146
+
Arg
CCT
[ENA]
¢þ
>WENV183677287
ORJL011735344
[ORJL] groundwater metagenome; groundwater
347
422
+
Arg
CCT
[ENA]
¢þ
>WENV183678825
ORJL011928214
[ORJL] groundwater metagenome; groundwater
293
368
+
Arg
CCT
[ENA]
¢þ
>WENV183680552
ORMF010196537
[ORMF] groundwater metagenome; groundwater
26089
26014
-
Arg
CCT
[ENA]
¢þ
>WENV183681914
ORMF010376020
[ORMF] groundwater metagenome; groundwater
1333
1408
+
Arg
CCT
[ENA]
¢þ
>WENV183681999
ORMF010386247
[ORMF] groundwater metagenome; groundwater
28
103
+
Arg
CCT
[ENA]
¢þ
>WENV183687299
ORMF011124509
[ORMF] groundwater metagenome; groundwater
306
231
-
Arg
CCT
[ENA]
¢þ
>WENV183692489
ORMF011924992
[ORMF] groundwater metagenome; groundwater
1365
1290
-
Arg
CCT
[ENA]
¢þ
>WENV183695068
ORMF012329835
[ORMF] groundwater metagenome; groundwater
282
357
+
Arg
CCT
[ENA]
¢þ
>WENV183696582
ORMF012578621
[ORMF] groundwater metagenome; groundwater
2325
2250
-
Arg
CCT
[ENA]
¢þ
>ENV09001596
ABSR01034880
Freshwater sediment metagenome lwMethylamine_C1
528
453
-
Arg
CCT
[ENA]
¡û
Identical group No.627029 (2 seq.)
>WENV170559089
CXWL01109771
[CXWL] groundwater metagenome; biofilm material
2676
2751
+
Arg
CCT
[ENA]
¢þ
>ENV09001579
ABSR01032985
Freshwater sediment metagenome lwMethylamine_C1
112
187
+
Arg
CCT
[ENA]
¡û
Identical group No.641696 (2 seq.)
>ENV09001369
ABSR01003691
Freshwater sediment metagenome lwMethylamine_C1
4956
4881
-
Arg
CCT
[ENA]
¡û
>ENV09001427
ABSR01006632
Freshwater sediment metagenome lwMethylamine_C1
1696
1771
+
Arg
CCT
[ENA]
¡û
Identical group No.711901 (2 seq.)
>W1910700253
MESI01000111
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_12_FULL_61_40 [MESI]
6816
6890
+
Arg
CCT
[ENA]
¡û
>ENV09001515
ABSR01022732
Freshwater sediment metagenome lwMethylamine_C1
275
349
+
Arg
CCT
[ENA]
¡û
Identical group No.753853 (4 seq.)
>WENV181379623
OFRD01004229
[OFRD] wastewater metagenome; Exp Tend CN 100WW
502
428
-
Arg
CCT
[ENA]
¢þ
>ENV09001557
ABSR01028976
Freshwater sediment metagenome lwMethylamine_C1
130
56
-
Arg
CCT
[ENA]
¡û
>W1610074371
BCWP01000039
Betaproteobacteria
Curvibacter delicatus NBRC 14919 [BCWP]
26225
26299
+
Arg
CCT
[ENA]
¡û
>W1710071489
BCWP01000039
Betaproteobacteria
Curvibacter delicatus NBRC 14919 [BCWP]
26225
26299
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK