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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwMethylamine_C1
Anticodon = CGA
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.47992 (4 seq.)
>WENV181167534
OEIU01040207
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
156
67
-
Ser
CGA
[ENA]
¢þ
>WENV181172189
OEIV010534185
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
92
3
-
Ser
CGA
[ENA]
¢þ
>WENV170552854
CXWK01002789
[CXWK] wastewater metagenome; activated sludge
198
109
-
Ser
CGA
[ENA]
¢þ
>ENV09001494
ABSR01018552
Freshwater sediment metagenome lwMethylamine_C1
374
285
-
Ser
CGA
[ENA]
¡û
Identical group No.86006 (1 seq.)
>ENV09001446
ABSR01009937
Freshwater sediment metagenome lwMethylamine_C1
429
341
-
Ser
CGA
[ENA]
¡û
Identical group No.178458 (1 seq.)
>ENV09001472
ABSR01013624
Freshwater sediment metagenome lwMethylamine_C1
406
491
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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