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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwMethylamine_C1
Anticodon = CGT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.483942 (15 seq.)
>W1711081817
LSTC01000083
Nitrospirota
Nitrospira sp. SCGC AG-212-E16 [LSTC]
23374
23449
+
Thr
CGT
[ENA]
¡û
>WENV180268233
OBEQ011944068
[OBEQ] groundwater metagenome; groundwater
149511
149586
+
Thr
CGT
[ENA]
¢þ
>WENV180352973
OBLQ010469267
[OBLQ] soil metagenome; soil
73
1
-
Thr
CGT
[ENA]
¢þ
>WENV181165177
OEIR01638429
[OEIR] soil metagenome; soil
206
131
-
Thr
CGT
[ENA]
¢þ
>WENV181185153
OELE01000026
[OELE] metagenome; 1998
5308
5383
+
Thr
CGT
[ENA]
¢þ
>ENV08001248
ABMV01060000
stromatolite metagenome; microbial fraction from Highborne Cay microbiolite in the Bahamas
2
77
+
Thr
CGT
[ENA]
¡û
>WENV170556184
CXWL01005506
[CXWL] groundwater metagenome; biofilm material
76
1
-
Thr
CGT
[ENA]
¢þ
>WENV170556242
CXWL01006043
[CXWL] groundwater metagenome; biofilm material
31919
31844
-
Thr
CGT
[ENA]
¢þ
>WENV170556413
CXWL01008258
[CXWL] groundwater metagenome; biofilm material
354
279
-
Thr
CGT
[ENA]
¢þ
>WENV170556600
CXWL01011015
[CXWL] groundwater metagenome; biofilm material
184
259
+
Thr
CGT
[ENA]
¢þ
>WENV170556922
CXWL01016272
[CXWL] groundwater metagenome; biofilm material
192960
192885
-
Thr
CGT
[ENA]
¢þ
>WENV170558409
CXWL01068201
[CXWL] groundwater metagenome; biofilm material
1196
1271
+
Thr
CGT
[ENA]
¢þ
>SRA1001330
SRR001063.187277
Stromatolites, microbial fraction from Pozas Azules II stromatolite in Mexico (SRP000151)
2
77
+
Thr
CGT
[SRA]
>ENV09001482
ABSR01016071
Freshwater sediment metagenome lwMethylamine_C1
359
434
+
Thr
CGT
[ENA]
¡û
>W1610920652
LSTC01000083
Nitrospirota
Nitrospira sp. SCGC AG-212-E16 [LSTC]
23374
23449
+
Thr
CGT
[ENA]
¡û
Identical group No.641701 (1 seq.)
>ENV09001474
ABSR01013754
Freshwater sediment metagenome lwMethylamine_C1
15
90
+
Thr
CGT
[ENA]
¡û
Identical group No.641710 (1 seq.)
>ENV09001570
ABSR01031034
Freshwater sediment metagenome lwMethylamine_C1
378
303
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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