This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwMethylamine_C1
Anticodon = CTC
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.441303 (1 seq.)
>ENV09001516
ABSR01023690
Freshwater sediment metagenome lwMethylamine_C1
304
380
+
Glu
CTC
[ENA]
¡û
Identical group No.641709 (2 seq.)
>ENV09000203
ABSN01028876
Freshwater sediment metagenome lwFormaldehyde_C1
47
122
+
Glu
CTC
[ENA]
¡û
>ENV09001552
ABSR01027847
Freshwater sediment metagenome lwMethylamine_C1
36
111
+
Glu
CTC
[ENA]
¡û
Identical group No.713745 (6 seq.)
>WENV170707107
LNAP01012784
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2082
2154
+
Glu
CTC
[ENA]
¢þ
>WENV170707331
LNAP01017726
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1922
1850
-
Glu
CTC
[ENA]
¢þ
>WENV170707509
LNAP01023340
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
3581
3653
+
Glu
CTC
[ENA]
¢þ
>WENV170707668
LNAP01028939
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2772
2844
+
Glu
CTC
[ENA]
¢þ
>WENV170708383
LNAP01075877
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
774
846
+
Glu
CTC
[ENA]
¢þ
>ENV09001603
ABSR01036034
Freshwater sediment metagenome lwMethylamine_C1
525
597
+
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK