This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwMethylamine_C1
Anticodon = GAG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.181325 (74 seq.)
>W131164724
ARBA01000002
Betaproteobacteria
Methylotenera mobilis 13 [ARBA]
561823
561907
+
Leu
GAG
[ENA]
¡û
>WENV180398050
OBPZ01063587
[OBPZ] marine metagenome; ENVO:00002010
110
26
-
Leu
GAG
[ENA]
¢þ
>WENV180594149
OCOY01064627
[OCOY] marine metagenome; ENVO:00002010
128
44
-
Leu
GAG
[ENA]
¢þ
>WENV181391635
OFRT01031683
[OFRT] seawater metagenome; seawater
116
200
+
Leu
GAG
[ENA]
¢þ
>WENV181392301
OFRW01024240
[OFRW] seawater metagenome; seawater
442
526
+
Leu
GAG
[ENA]
¢þ
>WENV182543348
OJBA01029470
[OJBA] seawater metagenome; Sea water
271
355
+
Leu
GAG
[ENA]
¢þ
>WENV182545296
OJBN01000781
[OJBN] seawater metagenome; Sea water
6545
6461
-
Leu
GAG
[ENA]
¢þ
>WENV182548226
OJBV01004105
[OJBV] seawater metagenome; Sea water
1933
1849
-
Leu
GAG
[ENA]
¢þ
>WENV182548580
OJBW01004266
[OJBW] seawater metagenome; Sea water
992
908
-
Leu
GAG
[ENA]
¢þ
>WENV182550466
OJCA01003451
[OJCA] seawater metagenome; Sea water
516
600
+
Leu
GAG
[ENA]
¢þ
>WENV182551821
OJCJ01000093
[OJCJ] seawater metagenome; Sea water
3732
3648
-
Leu
GAG
[ENA]
¢þ
>WENV182553685
OJCR01021418
[OJCR] seawater metagenome; Sea water
328
412
+
Leu
GAG
[ENA]
¢þ
>WENV182556970
OJDI01000116
[OJDI] seawater metagenome; Sea water
13176
13260
+
Leu
GAG
[ENA]
¢þ
>WENV182558065
OJDL01002899
[OJDL] seawater metagenome; Sea water
356
440
+
Leu
GAG
[ENA]
¢þ
>WENV182560549
OJDU01005070
[OJDU] seawater metagenome; Sea water
1420
1504
+
Leu
GAG
[ENA]
¢þ
>WENV182561299
OJDV01035094
[OJDV] seawater metagenome; Sea water
91
175
+
Leu
GAG
[ENA]
¢þ
>WENV182561759
OJDX01002331
[OJDX] seawater metagenome; Sea water
1034
950
-
Leu
GAG
[ENA]
¢þ
>WENV182563110
OJEB01000292
[OJEB] seawater metagenome; Sea water
5073
4989
-
Leu
GAG
[ENA]
¢þ
>WENV182564482
OJEF01000487
[OJEF] seawater metagenome; Sea water
1523
1607
+
Leu
GAG
[ENA]
¢þ
>WENV182565295
OJEH01001709
[OJEH] seawater metagenome; Sea water
2393
2477
+
Leu
GAG
[ENA]
¢þ
>WENV182565954
OJEI01003366
[OJEI] seawater metagenome; Sea water
366
450
+
Leu
GAG
[ENA]
¢þ
>WENV182567850
OJEP01000703
[OJEP] seawater metagenome; Sea water
4566
4482
-
Leu
GAG
[ENA]
¢þ
>WENV182569681
OJFB01000013
[OJFB] seawater metagenome; Sea water
235
151
-
Leu
GAG
[ENA]
¢þ
>WENV182571036
OJFG01000086
[OJFG] seawater metagenome; Sea water
8058
8142
+
Leu
GAG
[ENA]
¢þ
>WENV182571573
OJFK01000957
[OJFK] seawater metagenome; Sea water
506
590
+
Leu
GAG
[ENA]
¢þ
>WENV182573011
OJFO01019683
[OJFO] seawater metagenome; Sea water
378
462
+
Leu
GAG
[ENA]
¢þ
>WENV182573435
OJFP01001729
[OJFP] seawater metagenome; Sea water
2697
2613
-
Leu
GAG
[ENA]
¢þ
>WENV182574555
OJFS01000021
[OJFS] seawater metagenome; Sea water
56668
56752
+
Leu
GAG
[ENA]
¢þ
>WENV182575332
OJFU01006914
[OJFU] seawater metagenome; Sea water
1232
1148
-
Leu
GAG
[ENA]
¢þ
>WENV182576126
OJFX01003626
[OJFX] seawater metagenome; Sea water
3738
3822
+
Leu
GAG
[ENA]
¢þ
>WENV182576713
OJFY01002387
[OJFY] seawater metagenome; Sea water
1442
1358
-
Leu
GAG
[ENA]
¢þ
>WENV182580441
OJGW01000775
[OJGW] seawater metagenome; Sea water
3703
3619
-
Leu
GAG
[ENA]
¢þ
>WENV182581125
OJGX01000200
[OJGX] seawater metagenome; Sea water
4288
4372
+
Leu
GAG
[ENA]
¢þ
>WENV182582823
OJHC01000526
[OJHC] seawater metagenome; Sea water
6574
6490
-
Leu
GAG
[ENA]
¢þ
>WENV182583079
OJHD01000110
[OJHD] seawater metagenome; Sea water
3076
3160
+
Leu
GAG
[ENA]
¢þ
>WENV182583970
OJHF01001926
[OJHF] seawater metagenome; Sea water
1177
1261
+
Leu
GAG
[ENA]
¢þ
>WENV182585366
OJHH01012253
[OJHH] seawater metagenome; Sea water
1269
1353
+
Leu
GAG
[ENA]
¢þ
>WENV182589053
OJHY01014429
[OJHY] seawater metagenome; Sea water
366
450
+
Leu
GAG
[ENA]
¢þ
>WENV182592373
OJIR01000143
[OJIR] seawater metagenome; Sea water
4620
4704
+
Leu
GAG
[ENA]
¢þ
>WENV182594202
OJIV01001498
[OJIV] seawater metagenome; Sea water
4536
4452
-
Leu
GAG
[ENA]
¢þ
>WENV183055837
OLHH01001683
[OLHH] seawater metagenome; Sea water
2681
2597
-
Leu
GAG
[ENA]
¢þ
>WENV183056603
OLHJ01001910
[OLHJ] seawater metagenome; Sea water
3728
3644
-
Leu
GAG
[ENA]
¢þ
>WENV183057984
OLHN01000389
[OLHN] seawater metagenome; Sea water
652
736
+
Leu
GAG
[ENA]
¢þ
>WENV183058598
OLHR01002000
[OLHR] seawater metagenome; Sea water
1328
1412
+
Leu
GAG
[ENA]
¢þ
>WENV183059436
OLHU01004513
[OLHU] seawater metagenome; Sea water
276
360
+
Leu
GAG
[ENA]
¢þ
>WENV183060386
OLHX01006852
[OLHX] seawater metagenome; Sea water
678
762
+
Leu
GAG
[ENA]
¢þ
>WENV183061411
OLHZ01007815
[OLHZ] seawater metagenome; Sea water
1285
1369
+
Leu
GAG
[ENA]
¢þ
>WENV183064864
OLII01001853
[OLII] seawater metagenome; Sea water
6120
6036
-
Leu
GAG
[ENA]
¢þ
>WENV183619130
OOFP01031475
[OOFP] marine metagenome; seawater
116
200
+
Leu
GAG
[ENA]
¢þ
>WENV183627029
OOGK01025191
[OOGK] marine metagenome; seawater
442
526
+
Leu
GAG
[ENA]
¢þ
>WENV183631403
OOGU01100968
[OOGU] marine metagenome; sea ice
472
388
-
Leu
GAG
[ENA]
¢þ
>WENV170304425
CESI01043453
[CESI] marine metagenome genome assembly TARA_082_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
201
117
-
Leu
GAG
[ENA]
¢þ
>WENV170307067
CESJ01115262
[CESJ] marine metagenome genome assembly TARA_084_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
255
339
+
Leu
GAG
[ENA]
¢þ
>WENV170326960
CESU01035264
[CESU] marine metagenome genome assembly TARA_082_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
124
208
+
Leu
GAG
[ENA]
¢þ
>WENV170568427
FLMP01038972
[FLMP] seawater metagenome; seawater
942
858
-
Leu
GAG
[ENA]
¢þ
>WENV170571813
FLOH01000316
[FLOH] marine metagenome; water
107577
107661
+
Leu
GAG
[ENA]
¢þ
>WENV170706934
LNAP01009204
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
22507
22423
-
Leu
GAG
[ENA]
¢þ
>WENV170821634
MDSY01025169
[MDSY] marine metagenome; seawater
4960
5044
+
Leu
GAG
[ENA]
¢þ
>WENV170823058
MDSY01051003
[MDSY] marine metagenome; seawater
3011
3095
+
Leu
GAG
[ENA]
¢þ
>WENV170951875
MEHZ011574294
[MEHZ] marine metagenome; marine surface water
678
762
+
Leu
GAG
[ENA]
¢þ
>W141819359
JQMG01000001
Betaproteobacteria
Methylotenera sp. L2L1 [JQMG]
1705613
1705697
+
Leu
GAG
[ENA]
¡û
>C09107805
CP001672
Betaproteobacteria
Methylotenera mobilis JLW8 [CP001672]
1753354
1753270
-
Leu
GAG
[Ensembl]
¡û
>W1911624002
PQVH01000011
Betaproteobacteria
Methylotenera oryzisoli La3113 [PQVH]
85020
84936
-
Leu
GAG
[ENA]
¡û
>ENV09001299
ABSR01000764
Freshwater sediment metagenome lwMethylamine_C1
2665
2749
+
Leu
GAG
[ENA]
¡û
>ENV09001307
ABSR01001049
Freshwater sediment metagenome lwMethylamine_C1
1241
1157
-
Leu
GAG
[ENA]
¡û
>ENV09001329
ABSR01001801
Freshwater sediment metagenome lwMethylamine_C1
1171
1255
+
Leu
GAG
[ENA]
¡û
>ENV09001344
ABSR01002358
Freshwater sediment metagenome lwMethylamine_C1
6942
6858
-
Leu
GAG
[ENA]
¡û
>ENV09001430
ABSR01006889
Freshwater sediment metagenome lwMethylamine_C1
4540
4456
-
Leu
GAG
[ENA]
¡û
>ENV09001451
ABSR01010277
Freshwater sediment metagenome lwMethylamine_C1
457
541
+
Leu
GAG
[ENA]
¡û
>ENV09001490
ABSR01017934
Freshwater sediment metagenome lwMethylamine_C1
248
164
-
Leu
GAG
[ENA]
¡û
>ENV09001556
ABSR01028817
Freshwater sediment metagenome lwMethylamine_C1
412
328
-
Leu
GAG
[ENA]
¡û
>W1511432037
JUGF01000003
Betaproteobacteria
Methylotenera versatilis 7 [JUGF]
35165
35249
+
Leu
GAG
[ENA]
¡û
>W1511433525
JUHH01000001
Betaproteobacteria
Methylotenera sp. G11 [JUHH]
70557
70641
+
Leu
GAG
[ENA]
¡û
>WENV055096
AACY023210720
Marine microbial communities from Global Ocean Sampling (GOS)
846
760
-
Leu
GAG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK