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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwMethylamine_C1
Anticodon = GCT
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.8068 (1 seq.)
>ENV09001478
ABSR01015105
Freshwater sediment metagenome lwMethylamine_C1
368
275
-
Ser
GCT
[ENA]
¡û
Identical group No.8226 (33 seq.)
>W1710893311
LNEP01000012
Betaproteobacteria
Betaproteobacteria bacterium Ga0077540 [LNEP]
96063
95970
-
Ser
GCT
[ENA]
¡û
>W131164744
ARBA01000002
Betaproteobacteria
Methylotenera mobilis 13 [ARBA]
232142
232049
-
Ser
GCT
[ENA]
¡û
>W131186182
ARVX01000001
Betaproteobacteria
Methylotenera versatilis 79 [ARVX]
299072
299165
+
Ser
GCT
[ENA]
¡û
>W131186409
ARWC01000001
Betaproteobacteria
Methylotenera sp. 1P/1 [ARWC]
1415242
1415149
-
Ser
GCT
[ENA]
¡û
>W131186557
ARWF01000001
Betaproteobacteria
Methylotenera sp. 73s [ARWF]
1178547
1178640
+
Ser
GCT
[ENA]
¡û
>WENV181187817
OEOE01000039
[OEOE] activated sludge metagenome; Activated Sludge
14518
14425
-
Ser
GCT
[ENA]
¢þ
>WENV181189047
OEOF01000034
[OEOF] activated sludge metagenome; Activated Sludge
22364
22271
-
Ser
GCT
[ENA]
¢þ
>WENV181222660
OFDC01000054
[OFDC] hot springs metagenome; Water
60144
60051
-
Ser
GCT
[ENA]
¢þ
>WENV181226718
OFDN01000020
[OFDN] hot springs metagenome; Water
153439
153532
+
Ser
GCT
[ENA]
¢þ
>WENV181384197
OFRH01035099
[OFRH] wastewater metagenome; Exp Tend NO 100WW
283
190
-
Ser
GCT
[ENA]
¢þ
>WENV181400533
OFSF01009622
[OFSF] wastewater metagenome; Exp Tend VB 100WW
746
653
-
Ser
GCT
[ENA]
¢þ
>W141350154
JCKJ01000001
Betaproteobacteria
Methylophilaceae bacterium 11 [JCKJ]
2293123
2293030
-
Ser
GCT
[ENA]
¡û
>WENV170559158
CXWL01112316
[CXWL] groundwater metagenome; biofilm material
1067
1160
+
Ser
GCT
[ENA]
¢þ
>WENV170577525
FSSH01000116
[FSSH] freshwater metagenome; drinking water
271863
271956
+
Ser
GCT
[ENA]
¢þ
>WENV170705482
LNAO01000930
[LNAO] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
3299
3206
-
Ser
GCT
[ENA]
¢þ
>WENV170706208
LNAP01001687
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1050
957
-
Ser
GCT
[ENA]
¢þ
>WENV170706209
LNAP01001689
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
227
134
-
Ser
GCT
[ENA]
¢þ
>WENV170961568
MLJW01000169
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
9164
9071
-
Ser
GCT
[ENA]
¢þ
>WENV170961680
MLJW01000485
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
1903
1996
+
Ser
GCT
[ENA]
¢þ
>W141819379
JQMG01000001
Betaproteobacteria
Methylotenera sp. L2L1 [JQMG]
1419258
1419165
-
Ser
GCT
[ENA]
¡û
>W1910730035
MHBU01000027
Betaproteobacteria
Methylotenera sp. RIFCSPLOWO2_02_FULL_45_14 [MHBU]
82980
83073
+
Ser
GCT
[ENA]
¡û
>C09107801
CP001672
Betaproteobacteria
Methylotenera mobilis JLW8 [CP001672]
2074601
2074694
+
Ser
GCT
[Ensembl]
¡û
>W1911624008
PQVH01000013
Betaproteobacteria
Methylotenera oryzisoli La3113 [PQVH]
44796
44889
+
Ser
GCT
[ENA]
¡û
>C151104076
LN794158
Betaproteobacteria
Candidatus Methylopumilus turicensis MMS-10A-171 [LN794158]
1384997
1385090
+
Ser
GCT
[Ensembl]
¡û
>ENV09000674
ABSP01013679
Freshwater sediment metagenome lwMethane_C1
587
680
+
Ser
GCT
[ENA]
¡û
>ENV09000929
ABSQ01000490
Freshwater sediment metagenome lwMethenol_C1
605
512
-
Ser
GCT
[ENA]
¡û
>ENV09001293
ABSR01000664
Freshwater sediment metagenome lwMethylamine_C1
870
777
-
Ser
GCT
[ENA]
¡û
>ENV09001331
ABSR01001872
Freshwater sediment metagenome lwMethylamine_C1
970
877
-
Ser
GCT
[ENA]
¡û
>ENV09001345
ABSR01002384
Freshwater sediment metagenome lwMethylamine_C1
2465
2558
+
Ser
GCT
[ENA]
¡û
>W1511431985
JUGE01000001
Betaproteobacteria
Methylotenera sp. N17 [JUGE]
1960937
1960844
-
Ser
GCT
[ENA]
¡û
>W1511432031
JUGF01000002
Betaproteobacteria
Methylotenera versatilis 7 [JUGF]
1252291
1252198
-
Ser
GCT
[ENA]
¡û
>W1511433545
JUHH01000001
Betaproteobacteria
Methylotenera sp. G11 [JUHH]
2292730
2292637
-
Ser
GCT
[ENA]
¡û
>W1610753577
LNEP01000012
Betaproteobacteria
Betaproteobacteria bacterium Ga0077540 [LNEP]
96063
95970
-
Ser
GCT
[ENA]
¡û
Identical group No.14154 (3 seq.)
>WENV180353421
OBLQ010760028
[OBLQ] soil metagenome; soil
28
120
+
Ser
GCT
[ENA]
¢þ
>WENV170563555
CZCB01021433
[CZCB] anaerobic digester metagenome; anaerobic digester
401
309
-
Ser
GCT
[ENA]
¢þ
>ENV09001489
ABSR01017190
Freshwater sediment metagenome lwMethylamine_C1
196
288
+
Ser
GCT
[ENA]
¡û
Identical group No.71224 (1 seq.)
>ENV09001453
ABSR01010455
Freshwater sediment metagenome lwMethylamine_C1
16
105
+
Ser
GCT
[ENA]
¡û
Identical group No.71225 (1 seq.)
>ENV09001536
ABSR01025455
Freshwater sediment metagenome lwMethylamine_C1
88
177
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK