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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwMethylamine_C1
Anticodon = GGA
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.11960 (1 seq.)
>ENV09001531
ABSR01024742
Freshwater sediment metagenome lwMethylamine_C1
19
112
+
Ser
GGA
[ENA]
¡û
Identical group No.44764 (1 seq.)
>ENV09001476
ABSR01015030
Freshwater sediment metagenome lwMethylamine_C1
696
786
+
Ser
GGA
[ENA]
¡û
Identical group No.64105 (4 seq.)
>W1911623991
PQVH01000008
Betaproteobacteria
Methylotenera oryzisoli La3113 [PQVH]
573547
573458
-
Ser
GGA
[ENA]
¡û
>ENV09001393
ABSR01004581
Freshwater sediment metagenome lwMethylamine_C1
1549
1460
-
Ser
GGA
[ENA]
¡û
>ENV09001417
ABSR01006030
Freshwater sediment metagenome lwMethylamine_C1
325
414
+
Ser
GGA
[ENA]
¡û
>ENV09001444
ABSR01009459
Freshwater sediment metagenome lwMethylamine_C1
511
422
-
Ser
GGA
[ENA]
¡û
Identical group No.71223 (1 seq.)
>ENV09001295
ABSR01000688
Freshwater sediment metagenome lwMethylamine_C1
80
169
+
Ser
GGA
[ENA]
¡û
Identical group No.71226 (1 seq.)
>ENV09001554
ABSR01028362
Freshwater sediment metagenome lwMethylamine_C1
291
378
+
Ser
GGA
[ENA]
¡û
Identical group No.110819 (1 seq.)
>ENV09001607
ABSR01036688
Freshwater sediment metagenome lwMethylamine_C1
784
697
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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