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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwMethylamine_C1
Anticodon = TAA
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.86007 (1 seq.)
>ENV09001459
ABSR01011456
Freshwater sediment metagenome lwMethylamine_C1
150
62
-
Leu
TAA
[ENA]
¡û
Identical group No.105989 (4 seq.)
>ENV09001087
ABSQ01030300
Freshwater sediment metagenome lwMethenol_C1
320
233
-
Leu
TAA
[ENA]
¡û
>ENV09001485
ABSR01016432
Freshwater sediment metagenome lwMethylamine_C1
200
113
-
Leu
TAA
[ENA]
¡û
>ENV09001550
ABSR01027485
Freshwater sediment metagenome lwMethylamine_C1
713
626
-
Leu
TAA
[ENA]
¡û
>W1511433527
JUHH01000001
Betaproteobacteria
Methylotenera sp. G11 [JUHH]
171999
172086
+
Leu
TAA
[ENA]
¡û
Identical group No.110817 (1 seq.)
>ENV09001473
ABSR01013734
Freshwater sediment metagenome lwMethylamine_C1
521
434
-
Leu
TAA
[ENA]
¡û
Identical group No.110818 (1 seq.)
>ENV09001538
ABSR01025593
Freshwater sediment metagenome lwMethylamine_C1
863
776
-
Leu
TAA
[ENA]
¡û
Identical group No.123730 (11 seq.)
>W131164736
ARBA01000002
Betaproteobacteria
Methylotenera mobilis 13 [ARBA]
1581191
1581105
-
Leu
TAA
[ENA]
¡û
>W141819372
JQMG01000001
Betaproteobacteria
Methylotenera sp. L2L1 [JQMG]
2622468
2622382
-
Leu
TAA
[ENA]
¡û
>C09107793
CP001672
Betaproteobacteria
Methylotenera mobilis JLW8 [CP001672]
844382
844468
+
Leu
TAA
[Ensembl]
¡û
>W1911623990
PQVH01000008
Betaproteobacteria
Methylotenera oryzisoli La3113 [PQVH]
583855
583769
-
Leu
TAA
[ENA]
¡û
>ENV09001279
ABSR01000164
Freshwater sediment metagenome lwMethylamine_C1
437
523
+
Leu
TAA
[ENA]
¡û
>ENV09001342
ABSR01002291
Freshwater sediment metagenome lwMethylamine_C1
1595
1509
-
Leu
TAA
[ENA]
¡û
>ENV09001354
ABSR01002685
Freshwater sediment metagenome lwMethylamine_C1
2740
2654
-
Leu
TAA
[ENA]
¡û
>ENV09001361
ABSR01003035
Freshwater sediment metagenome lwMethylamine_C1
408
322
-
Leu
TAA
[ENA]
¡û
>ENV09001368
ABSR01003483
Freshwater sediment metagenome lwMethylamine_C1
1761
1675
-
Leu
TAA
[ENA]
¡û
>ENV09001405
ABSR01005582
Freshwater sediment metagenome lwMethylamine_C1
749
835
+
Leu
TAA
[ENA]
¡û
>ENV09001433
ABSR01007113
Freshwater sediment metagenome lwMethylamine_C1
36
122
+
Leu
TAA
[ENA]
¡û
Identical group No.148922 (2 seq.)
>WENV180248909
OBEQ010151146
[OBEQ] groundwater metagenome; groundwater
180
266
+
Leu
TAA
[ENA]
¢þ
>ENV09001512
ABSR01021489
Freshwater sediment metagenome lwMethylamine_C1
182
268
+
Leu
TAA
[ENA]
¡û
Identical group No.178459 (1 seq.)
>ENV09001501
ABSR01019593
Freshwater sediment metagenome lwMethylamine_C1
489
407
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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