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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwMethylamine_C1
Anticodon = TAG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.190899 (5 seq.)
>C09107807
CP001672
Betaproteobacteria
Methylotenera mobilis JLW8 [CP001672]
1454813
1454729
-
Leu
TAG
[Ensembl]
¡û
>W1911623978
PQVH01000002
Betaproteobacteria
Methylotenera oryzisoli La3113 [PQVH]
225786
225870
+
Leu
TAG
[ENA]
¡û
>ENV09000608
ABSP01002310
Freshwater sediment metagenome lwMethane_C1
820
736
-
Leu
TAG
[ENA]
¡û
>ENV09001309
ABSR01001103
Freshwater sediment metagenome lwMethylamine_C1
1254
1338
+
Leu
TAG
[ENA]
¡û
>W1511432004
JUGF01000001
Betaproteobacteria
Methylotenera versatilis 7 [JUGF]
305291
305375
+
Leu
TAG
[ENA]
¡û
Identical group No.191097 (18 seq.)
>W131164726
ARBA01000002
Betaproteobacteria
Methylotenera mobilis 13 [ARBA]
790532
790616
+
Leu
TAG
[ENA]
¡û
>W131186191
ARVX01000001
Betaproteobacteria
Methylotenera versatilis 79 [ARVX]
1953514
1953598
+
Leu
TAG
[ENA]
¡û
>W131186550
ARWF01000001
Betaproteobacteria
Methylotenera sp. 73s [ARWF]
224212
224296
+
Leu
TAG
[ENA]
¡û
>WENV181187874
OEOE01000789
[OEOE] activated sludge metagenome; Activated Sludge
1270
1354
+
Leu
TAG
[ENA]
¢þ
>WENV181379939
OFRD01015254
[OFRD] wastewater metagenome; Exp Tend CN 100WW
1154
1070
-
Leu
TAG
[ENA]
¢þ
>WENV181845795
OGVX01009402
[OGVX] freshwater metagenome; freshwater
252
336
+
Leu
TAG
[ENA]
¢þ
>WENV170558817
CXWL01093233
[CXWL] groundwater metagenome; biofilm material
91
7
-
Leu
TAG
[ENA]
¢þ
>WENV170961464
MLJW01000057
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
52156
52240
+
Leu
TAG
[ENA]
¢þ
>W141819362
JQMG01000001
Betaproteobacteria
Methylotenera sp. L2L1 [JQMG]
1921966
1922050
+
Leu
TAG
[ENA]
¡û
>W1910730019
MHBU01000001
Betaproteobacteria
Methylotenera sp. RIFCSPLOWO2_02_FULL_45_14 [MHBU]
50227
50143
-
Leu
TAG
[ENA]
¡û
>ENV09000137
ABSN01016812
Freshwater sediment metagenome lwFormaldehyde_C1
649
733
+
Leu
TAG
[ENA]
¡û
>ENV09000957
ABSQ01002348
Freshwater sediment metagenome lwMethenol_C1
1058
974
-
Leu
TAG
[ENA]
¡û
>ENV09001039
ABSQ01020873
Freshwater sediment metagenome lwMethenol_C1
216
132
-
Leu
TAG
[ENA]
¡û
>ENV09001125
ABSQ01036370
Freshwater sediment metagenome lwMethenol_C1
176
92
-
Leu
TAG
[ENA]
¡û
>ENV09001507
ABSR01020457
Freshwater sediment metagenome lwMethylamine_C1
581
497
-
Leu
TAG
[ENA]
¡û
>ENV09001532
ABSR01024756
Freshwater sediment metagenome lwMethylamine_C1
616
532
-
Leu
TAG
[ENA]
¡û
>ENV09001565
ABSR01030293
Freshwater sediment metagenome lwMethylamine_C1
130
46
-
Leu
TAG
[ENA]
¡û
>C10109369
CP002056
Betaproteobacteria
Methylotenera versatilis 301 [CP002056]
1717214
1717130
-
Leu
TAG
[Ensembl]
¡û
Identical group No.215874 (1 seq.)
>ENV09001563
ABSR01030183
Freshwater sediment metagenome lwMethylamine_C1
612
528
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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