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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwMethylamine_C1
Anticodon = TGA
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.44765 (1 seq.)
>ENV09001523
ABSR01024206
Freshwater sediment metagenome lwMethylamine_C1
329
239
-
Ser
TGA
[ENA]
¡û
Identical group No.45704 (20 seq.)
>W1711224648
LXUF01000001
Betaproteobacteria
Methylovorus sp. MM2 MM1 [LXUF]
1242821
1242910
+
Ser
TGA
[ENA]
¡û
>W131164731
ARBA01000002
Betaproteobacteria
Methylotenera mobilis 13 [ARBA]
1001493
1001582
+
Ser
TGA
[ENA]
¡û
>WENV181187841
OEOE01000231
[OEOE] activated sludge metagenome; Activated Sludge
7734
7645
-
Ser
TGA
[ENA]
¢þ
>WENV181187842
OEOE01000231
[OEOE] activated sludge metagenome; Activated Sludge
5409
5320
-
Ser
TGA
[ENA]
¢þ
>WENV181189033
OEOF01000008
[OEOF] activated sludge metagenome; Activated Sludge
27582
27671
+
Ser
TGA
[ENA]
¢þ
>WENV181384264
OFRH01047775
[OFRH] wastewater metagenome; Exp Tend NO 100WW
217
306
+
Ser
TGA
[ENA]
¢þ
>WENV181400487
OFSF01008026
[OFSF] wastewater metagenome; Exp Tend VB 100WW
814
725
-
Ser
TGA
[ENA]
¢þ
>WENV181838173
OGVM01016391
[OGVM] freshwater metagenome; freshwater
392
481
+
Ser
TGA
[ENA]
¢þ
>WENV181843439
OGVU01014957
[OGVU] freshwater metagenome; freshwater
650
561
-
Ser
TGA
[ENA]
¢þ
>WENV170705501
LNAO01001121
[LNAO] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2389
2300
-
Ser
TGA
[ENA]
¢þ
>WENV170706347
LNAP01002291
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
26342
26253
-
Ser
TGA
[ENA]
¢þ
>WENV170706525
LNAP01003914
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
13976
13887
-
Ser
TGA
[ENA]
¢þ
>W141819367
JQMG01000001
Betaproteobacteria
Methylotenera sp. L2L1 [JQMG]
2138744
2138833
+
Ser
TGA
[ENA]
¡û
>W1911623986
PQVH01000008
Betaproteobacteria
Methylotenera oryzisoli La3113 [PQVH]
102575
102664
+
Ser
TGA
[ENA]
¡û
>C151104071
LN794158
Betaproteobacteria
Candidatus Methylopumilus turicensis MMS-10A-171 [LN794158]
776728
776817
+
Ser
TGA
[Ensembl]
¡û
>ENV09000949
ABSQ01001792
Freshwater sediment metagenome lwMethenol_C1
725
814
+
Ser
TGA
[ENA]
¡û
>ENV09001290
ABSR01000603
Freshwater sediment metagenome lwMethylamine_C1
956
1045
+
Ser
TGA
[ENA]
¡û
>ENV09001298
ABSR01000718
Freshwater sediment metagenome lwMethylamine_C1
648
559
-
Ser
TGA
[ENA]
¡û
>W1511433563
JUHH01000001
Betaproteobacteria
Methylotenera sp. G11 [JUHH]
513491
513402
-
Ser
TGA
[ENA]
¡û
>W1611008612
LXUF01000001
Betaproteobacteria
Methylovorus sp. MM2 MM1 [LXUF]
1242821
1242910
+
Ser
TGA
[ENA]
¡û
Identical group No.50028 (15 seq.)
>W131186198
ARVX01000001
Betaproteobacteria
Methylotenera versatilis 79 [ARVX]
2179968
2179879
-
Ser
TGA
[ENA]
¡û
>W131186582
ARWF01000001
Betaproteobacteria
Methylotenera sp. 73s [ARWF]
450666
450577
-
Ser
TGA
[ENA]
¡û
>WENV181188533
OEOE01181078
[OEOE] activated sludge metagenome; Activated Sludge
177
266
+
Ser
TGA
[ENA]
¢þ
>WENV181189411
OEOF01038139
[OEOF] activated sludge metagenome; Activated Sludge
213
302
+
Ser
TGA
[ENA]
¢þ
>WENV170559191
CXWL01113685
[CXWL] groundwater metagenome; biofilm material
2354
2265
-
Ser
TGA
[ENA]
¢þ
>WENV170577614
FSSH01000274
[FSSH] freshwater metagenome; drinking water
42460
42371
-
Ser
TGA
[ENA]
¢þ
>WENV170710209
LNFM01001301
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
18231
18320
+
Ser
TGA
[ENA]
¢þ
>WENV170712551
LNFM01014732
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
91
2
-
Ser
TGA
[ENA]
¢þ
>WENV170712659
LNFM01016107
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
8741
8830
+
Ser
TGA
[ENA]
¢þ
>W1910730038
MHBU01000028
Betaproteobacteria
Methylotenera sp. RIFCSPLOWO2_02_FULL_45_14 [MHBU]
5274
5185
-
Ser
TGA
[ENA]
¡û
>ENV09001359
ABSR01002924
Freshwater sediment metagenome lwMethylamine_C1
1567
1478
-
Ser
TGA
[ENA]
¡û
>C10109372
CP002056
Betaproteobacteria
Methylotenera versatilis 301 [CP002056]
1541470
1541381
-
Ser
TGA
[Ensembl]
¡û
>W1511432005
JUGF01000001
Betaproteobacteria
Methylotenera versatilis 7 [JUGF]
522102
522191
+
Ser
TGA
[ENA]
¡û
>WENV058034
AACY023315194
Marine microbial communities from Global Ocean Sampling (GOS)
904
815
-
Ser
TGA
[ENA]
>WENV058809
AACY023342460
Marine microbial communities from Global Ocean Sampling (GOS)
1436
1525
+
Ser
TGA
[ENA]
Identical group No.65623 (2 seq.)
>ENV09001088
ABSQ01030761
Freshwater sediment metagenome lwMethenol_C1
388
477
+
Ser
TGA
[ENA]
¡û
>ENV09001593
ABSR01034012
Freshwater sediment metagenome lwMethylamine_C1
378
465
+
Ser
TGA
[ENA]
¡û
Identical group No.86008 (1 seq.)
>ENV09001543
ABSR01027042
Freshwater sediment metagenome lwMethylamine_C1
483
395
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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