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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwMethylamine_C1
Anticodon = TGC
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.465310 (83 seq.)
>W1710878085
LMQQ01000002
Betaproteobacteria
Methylophilus sp. Leaf414 [LMQQ]
3759
3684
-
Ala
TGC
[ENA]
¡û
>W1710878166
LMQS01000002
Betaproteobacteria
Methylophilus sp. Leaf416 [LMQS]
4133
4058
-
Ala
TGC
[ENA]
¡û
>W1710878403
LMQX01000012
Betaproteobacteria
Methylophilus sp. Leaf459 [LMQX]
1933
2008
+
Ala
TGC
[ENA]
¡û
>W1711718087
MTHD01000011
Betaproteobacteria
Azonexus hydrophilus [MTHD]
2020
2095
+
Ala
TGC
[ENA]
¡û
>W131164722
ARBA01000001
Betaproteobacteria
Methylotenera mobilis 13 [ARBA]
2609
2534
-
Ala
TGC
[ENA]
¡û
>W131164758
ARBA01000003
Betaproteobacteria
Methylotenera mobilis 13 [ARBA]
224403
224328
-
Ala
TGC
[ENA]
¡û
>W131164760
ARBA01000003
Betaproteobacteria
Methylotenera mobilis 13 [ARBA]
218414
218339
-
Ala
TGC
[ENA]
¡û
>W131186204
ARVX01000001
Betaproteobacteria
Methylotenera versatilis 79 [ARVX]
689202
689127
-
Ala
TGC
[ENA]
¡û
>W131186566
ARWF01000001
Betaproteobacteria
Methylotenera sp. 73s [ARWF]
1568672
1568597
-
Ala
TGC
[ENA]
¡û
>W131186579
ARWF01000001
Betaproteobacteria
Methylotenera sp. 73s [ARWF]
878087
878012
-
Ala
TGC
[ENA]
¡û
>C007458
CP000089
Betaproteobacteria
Dechloromonas aromatica [CP000089]
78529
78604
+
Ala
TGC
[Ensembl]
¡û
>C007466
CP000089
Betaproteobacteria
Dechloromonas aromatica [CP000089]
716952
717027
+
Ala
TGC
[Ensembl]
¡û
>C007472
CP000089
Betaproteobacteria
Dechloromonas aromatica [CP000089]
872297
872372
+
Ala
TGC
[Ensembl]
¡û
>C007479
CP000089
Betaproteobacteria
Dechloromonas aromatica [CP000089]
1229453
1229528
+
Ala
TGC
[Ensembl]
¡û
>WENV180285176
OBID01261512
[OBID] metagenome; sludge
202
127
-
Ala
TGC
[ENA]
¢þ
>WENV180285192
OBID01270381
[OBID] metagenome; sludge
282
357
+
Ala
TGC
[ENA]
¢þ
>WENV180285862
OBID01771188
[OBID] metagenome; sludge
76
1
-
Ala
TGC
[ENA]
¢þ
>WENV180310730
OBJT01017833
[OBJT] soil metagenome; soil
898
823
-
Ala
TGC
[ENA]
¢þ
>WENV180594064
OCOY01023753
[OCOY] marine metagenome; ENVO:00002010
377
302
-
Ala
TGC
[ENA]
¢þ
>WENV181188186
OEOE01040946
[OEOE] activated sludge metagenome; Activated Sludge
438
363
-
Ala
TGC
[ENA]
¢þ
>WENV181190073
OEOF01457826
[OEOF] activated sludge metagenome; Activated Sludge
43
118
+
Ala
TGC
[ENA]
¢þ
>WENV181365217
OFPL01001029
[OFPL] sediment metagenome; Lake sediment
269
344
+
Ala
TGC
[ENA]
¢þ
>WENV181371963
OFQW01004336
[OFQW] wastewater metagenome; Exp Tend NO 90WW
1046
971
-
Ala
TGC
[ENA]
¢þ
>WENV181376012
OFQZ01012275
[OFQZ] wastewater metagenome; Exp Tend NO 0WW
766
841
+
Ala
TGC
[ENA]
¢þ
>WENV181380625
OFRE01000832
[OFRE] wastewater metagenome; Exp Tend NO 50WW
4887
4812
-
Ala
TGC
[ENA]
¢þ
>WENV181389732
OFRO01002597
[OFRO] wastewater metagenome; Exp Tend NO 10WW
2616
2691
+
Ala
TGC
[ENA]
¢þ
>WENV181834761
OGVG01000450
[OGVG] freshwater metagenome; freshwater
3414
3489
+
Ala
TGC
[ENA]
¢þ
>W141220072
AZXN01000001
Betaproteobacteria
Methylophilus sp. 5 [AZXN]
1103802
1103727
-
Ala
TGC
[ENA]
¡û
>W141220074
AZXN01000001
Betaproteobacteria
Methylophilus sp. 5 [AZXN]
1097903
1097828
-
Ala
TGC
[ENA]
¡û
>W141220078
AZXN01000001
Betaproteobacteria
Methylophilus sp. 5 [AZXN]
490801
490726
-
Ala
TGC
[ENA]
¡û
>ENV08001346
ABMW01100929
freshwater metagenome; microbial fraction from tilapia pond at Kent SeaTech (Salton Sea, CA)
40
112
+
Ala
TGC
[ENA]
¡û
>WENV170575235
FLYN01047049
[FLYN] hot springs metagenome; Sediment
3
78
+
Ala
TGC
[ENA]
¢þ
>WENV170577738
FSSH01000726
[FSSH] freshwater metagenome; drinking water
3706
3631
-
Ala
TGC
[ENA]
¢þ
>WENV170646150
JQGG01001674
[JQGG] wastewater metagenome; domestic wastewater sediment treated with nitrate and nitrite at 100mg /litre each
943
868
-
Ala
TGC
[ENA]
¢þ
>WENV170707716
LNAP01030945
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1789
1864
+
Ala
TGC
[ENA]
¢þ
>WENV170715087
LNFM01131985
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
653
578
-
Ala
TGC
[ENA]
¢þ
>WENV170961463
MLJW01000056
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
149243
149318
+
Ala
TGC
[ENA]
¢þ
>C191081646
CP031842
Betaproteobacteria
Dechloromonas sp. HYN0024 [CP031842]
569440
569515
+
Ala
TGC
-
¡û
>C191081652
CP031842
Betaproteobacteria
Dechloromonas sp. HYN0024 [CP031842]
757606
757681
+
Ala
TGC
-
¡û
>C191081671
CP031842
Betaproteobacteria
Dechloromonas sp. HYN0024 [CP031842]
2240222
2240147
-
Ala
TGC
-
¡û
>W09100867
AADF01000001
Betaproteobacteria
Dechloromonas aromatica RCB [AADF]
1152525
1152600
+
Ala
TGC
[ENA]
¡û
>W141819348
JQMG01000001
Betaproteobacteria
Methylotenera sp. L2L1 [JQMG]
1062116
1062191
+
Ala
TGC
[ENA]
¡û
>W141819350
JQMG01000001
Betaproteobacteria
Methylotenera sp. L2L1 [JQMG]
1068111
1068186
+
Ala
TGC
[ENA]
¡û
>W141819386
JQMG01000001
Betaproteobacteria
Methylotenera sp. L2L1 [JQMG]
211562
211487
-
Ala
TGC
[ENA]
¡û
>C09107778
CP001672
Betaproteobacteria
Methylotenera mobilis JLW8 [CP001672]
216355
216430
+
Ala
TGC
[Ensembl]
¡û
>C09107789
CP001672
Betaproteobacteria
Methylotenera mobilis JLW8 [CP001672]
692978
693053
+
Ala
TGC
[Ensembl]
¡û
>W1911624015
PQVH01000019
Betaproteobacteria
Methylotenera oryzisoli La3113 [PQVH]
3643
3568
-
Ala
TGC
[ENA]
¡û
>SRA1001451
SRR001064.374447
Tilapia Farm, microbial fraction from tilapia pond at Kent SeaTech (Salton Sea, CA) (SRP000152)
40
112
+
Ala
TGC
[SRA]
>SRA1003599
SRR002327.59901
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
51
126
+
Ala
TGC
[SRA]
>SRA1003976
SRR002328.68302
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
155
230
+
Ala
TGC
[SRA]
>ENV09000762
ABSP01031467
Freshwater sediment metagenome lwMethane_C1
755
831
+
Ala
TGC
[ENA]
¡û
>ENV09000933
ABSQ01000554
Freshwater sediment metagenome lwMethenol_C1
806
731
-
Ala
TGC
[ENA]
¡û
>ENV09000955
ABSQ01002143
Freshwater sediment metagenome lwMethenol_C1
1829
1904
+
Ala
TGC
[ENA]
¡û
>ENV09001277
ABSR01000098
Freshwater sediment metagenome lwMethylamine_C1
1712
1637
-
Ala
TGC
[ENA]
¡û
>ENV09001297
ABSR01000690
Freshwater sediment metagenome lwMethylamine_C1
4520
4445
-
Ala
TGC
[ENA]
¡û
>ENV09001335
ABSR01001956
Freshwater sediment metagenome lwMethylamine_C1
2505
2430
-
Ala
TGC
[ENA]
¡û
>ENV09001377
ABSR01003989
Freshwater sediment metagenome lwMethylamine_C1
427
352
-
Ala
TGC
[ENA]
¡û
>ENV09001384
ABSR01004128
Freshwater sediment metagenome lwMethylamine_C1
3509
3434
-
Ala
TGC
[ENA]
¡û
>ENV09001441
ABSR01008692
Freshwater sediment metagenome lwMethylamine_C1
211
286
+
Ala
TGC
[ENA]
¡û
>ENV09001468
ABSR01013256
Freshwater sediment metagenome lwMethylamine_C1
238
313
+
Ala
TGC
[ENA]
¡û
>ENV09001587
ABSR01033874
Freshwater sediment metagenome lwMethylamine_C1
305
380
+
Ala
TGC
[ENA]
¡û
>WENV11100231
ADZX01000670
Sediment metagenome
649
574
-
Ala
TGC
[ENA]
¡û
>W1511432013
JUGF01000002
Betaproteobacteria
Methylotenera versatilis 7 [JUGF]
823842
823917
+
Ala
TGC
[ENA]
¡û
>W1511432028
JUGF01000002
Betaproteobacteria
Methylotenera versatilis 7 [JUGF]
1484458
1484533
+
Ala
TGC
[ENA]
¡û
>W1511433388
JUHE01000001
Betaproteobacteria
Methylophilus sp. Q8 [JUHE]
1124938
1125013
+
Ala
TGC
[ENA]
¡û
>W1511433390
JUHE01000001
Betaproteobacteria
Methylophilus sp. Q8 [JUHE]
1130833
1130908
+
Ala
TGC
[ENA]
¡û
>W1511433394
JUHE01000001
Betaproteobacteria
Methylophilus sp. Q8 [JUHE]
1806099
1806174
+
Ala
TGC
[ENA]
¡û
>W1511433524
JUHH01000001
Betaproteobacteria
Methylotenera sp. G11 [JUHH]
43395
43470
+
Ala
TGC
[ENA]
¡û
>W1511433548
JUHH01000001
Betaproteobacteria
Methylotenera sp. G11 [JUHH]
1761488
1761413
-
Ala
TGC
[ENA]
¡û
>W1511433550
JUHH01000001
Betaproteobacteria
Methylotenera sp. G11 [JUHH]
1755508
1755433
-
Ala
TGC
[ENA]
¡û
>W1610740431
LMQQ01000002
Betaproteobacteria
Methylophilus sp. Leaf414 [LMQQ]
3759
3684
-
Ala
TGC
[ENA]
¡û
>W1610740512
LMQS01000002
Betaproteobacteria
Methylophilus sp. Leaf416 [LMQS]
4133
4058
-
Ala
TGC
[ENA]
¡û
>W1610740749
LMQX01000012
Betaproteobacteria
Methylophilus sp. Leaf459 [LMQX]
1933
2008
+
Ala
TGC
[ENA]
¡û
>WENV080189
AATO01011435
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
673
748
+
Ala
TGC
[ENA]
>ENV000024
AB213422
Environmental sample from ENV division of INSDC
179
254
+
Ala
TGC
[ENA]
>ENV000413
AF422535
Environmental sample from ENV division of INSDC
208
283
+
Ala
TGC
[ENA]
>ENV000419
AF422540
Environmental sample from ENV division of INSDC
207
282
+
Ala
TGC
[ENA]
>ENV000423
AF422542
Environmental sample from ENV division of INSDC
207
282
+
Ala
TGC
[ENA]
>ENV000425
AF422543
Environmental sample from ENV division of INSDC
207
282
+
Ala
TGC
[ENA]
>ENV000436
AF422552
Environmental sample from ENV division of INSDC
207
282
+
Ala
TGC
[ENA]
>ENV000442
AF422556
Environmental sample from ENV division of INSDC
207
282
+
Ala
TGC
[ENA]
>ENV000451
AF422561
Environmental sample from ENV division of INSDC
207
282
+
Ala
TGC
[ENA]
>ENV000467
AF422575
Environmental sample from ENV division of INSDC
207
282
+
Ala
TGC
[ENA]
Identical group No.548673 (10 seq.)
>WENV181364967
OFPG01001751
[OFPG] sediment metagenome; Lake sediment
127
202
+
Ala
TGC
[ENA]
¢þ
>WENV181379876
OFRD01012422
[OFRD] wastewater metagenome; Exp Tend CN 100WW
677
752
+
Ala
TGC
[ENA]
¢þ
>WENV181400506
OFSF01008733
[OFSF] wastewater metagenome; Exp Tend VB 100WW
677
752
+
Ala
TGC
[ENA]
¢þ
>WENV170620759
FUWD013038542
[FUWD] metagenome; unknown
708
633
-
Ala
TGC
[ENA]
¢þ
>WENV170628902
FUWD013255720
[FUWD] metagenome; unknown
708
633
-
Ala
TGC
[ENA]
¢þ
>ENV09001292
ABSR01000622
Freshwater sediment metagenome lwMethylamine_C1
1000
925
-
Ala
TGC
[ENA]
¡û
>C10109333
CP002056
Betaproteobacteria
Methylotenera versatilis 301 [CP002056]
128831
128906
+
Ala
TGC
[Ensembl]
¡û
>C10109335
CP002056
Betaproteobacteria
Methylotenera versatilis 301 [CP002056]
134999
135074
+
Ala
TGC
[Ensembl]
¡û
>C10109345
CP002056
Betaproteobacteria
Methylotenera versatilis 301 [CP002056]
728244
728319
+
Ala
TGC
[Ensembl]
¡û
>WENV058849
AACY023344343
Marine microbial communities from Global Ocean Sampling (GOS)
1299
1222
-
Ala
TGC
[ENA]
Identical group No.616310 (3 seq.)
>WENV181372328
OFQW01046862
[OFQW] wastewater metagenome; Exp Tend NO 90WW
394
320
-
Ala
TGC
[ENA]
¢þ
>WENV181381454
OFRE01089457
[OFRE] wastewater metagenome; Exp Tend NO 50WW
227
153
-
Ala
TGC
[ENA]
¢þ
>ENV09001460
ABSR01011845
Freshwater sediment metagenome lwMethylamine_C1
53
127
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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