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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwMethylamine_C1
Anticodon = TTC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.451815 (64 seq.)
>W1710878062
LMQQ01000001
Betaproteobacteria
Methylophilus sp. Leaf414 [LMQQ]
36836
36911
+
Glu
TTC
[ENA]
¡û
>W1710878144
LMQS01000001
Betaproteobacteria
Methylophilus sp. Leaf416 [LMQS]
36781
36856
+
Glu
TTC
[ENA]
¡û
>W1710878371
LMQX01000001
Betaproteobacteria
Methylophilus sp. Leaf459 [LMQX]
36186
36261
+
Glu
TTC
[ENA]
¡û
>W1711224650
LXUF01000001
Betaproteobacteria
Methylovorus sp. MM2 MM1 [LXUF]
1317136
1317211
+
Glu
TTC
[ENA]
¡û
>W1711339976
MCAW01000001
Betaproteobacteria
Methylophilales bacterium LSUCC0135 [MCAW]
327920
327995
+
Glu
TTC
[ENA]
¡û
>W1711386565
MEFO01000012
Gammaproteobacteria
Xanthomonadaceae bacterium SCN 69-123 [MEFO]
4116
4041
-
Glu
TTC
[ENA]
¡û
>W131163883
ARAC01000001
Betaproteobacteria
Methylophilus sp. 42 [ARAC]
1534653
1534728
+
Glu
TTC
[ENA]
¡û
>W131164733
ARBA01000002
Betaproteobacteria
Methylotenera mobilis 13 [ARBA]
1200735
1200810
+
Glu
TTC
[ENA]
¡û
>W131164734
ARBA01000002
Betaproteobacteria
Methylotenera mobilis 13 [ARBA]
1200901
1200976
+
Glu
TTC
[ENA]
¡û
>W131170290
ARFK01000004
Betaproteobacteria
Methylophilus sp. 1 [ARFK]
955551
955626
+
Glu
TTC
[ENA]
¡û
>W131176242
ARJW01000015
Betaproteobacteria
Methylophilus methylotrophus DSM 46235 = ATCC 53528 [ARJW]
136688
136613
-
Glu
TTC
[ENA]
¡û
>W131186200
ARVX01000001
Betaproteobacteria
Methylotenera versatilis 79 [ARVX]
2128639
2128564
-
Glu
TTC
[ENA]
¡û
>W131186421
ARWC01000001
Betaproteobacteria
Methylotenera sp. 1P/1 [ARWC]
487099
487024
-
Glu
TTC
[ENA]
¡û
>W131186584
ARWF01000001
Betaproteobacteria
Methylotenera sp. 73s [ARWF]
399337
399262
-
Glu
TTC
[ENA]
¡û
>W131222270
AUBD01000001
Gammaproteobacteria
Silanimonas lenta DSM 16282 [AUBD]
177839
177764
-
Glu
TTC
[ENA]
¡û
>WENV181189029
OEOE01605689
[OEOE] activated sludge metagenome; Activated Sludge
77
2
-
Glu
TTC
[ENA]
¢þ
>WENV181189053
OEOF01000046
[OEOF] activated sludge metagenome; Activated Sludge
18661
18736
+
Glu
TTC
[ENA]
¢þ
>WENV181189429
OEOF01043200
[OEOF] activated sludge metagenome; Activated Sludge
8
83
+
Glu
TTC
[ENA]
¢þ
>WENV181190220
OEOF01614355
[OEOF] activated sludge metagenome; Activated Sludge
77
2
-
Glu
TTC
[ENA]
¢þ
>WENV181222568
OFDC01000010
[OFDC] hot springs metagenome; Water
123
198
+
Glu
TTC
[ENA]
¢þ
>WENV181226781
OFDN01000058
[OFDN] hot springs metagenome; Water
119630
119555
-
Glu
TTC
[ENA]
¢þ
>W141220064
AZXN01000001
Betaproteobacteria
Methylophilus sp. 5 [AZXN]
2676025
2676100
+
Glu
TTC
[ENA]
¡û
>W141231904
BAUS01000002
Betaproteobacteria
Methylophilus sp. OH31 [BAUS]
956504
956579
+
Glu
TTC
[ENA]
¡û
>W141350166
JCKJ01000001
Betaproteobacteria
Methylophilaceae bacterium 11 [JCKJ]
1352794
1352719
-
Glu
TTC
[ENA]
¡û
>WENV170018655
BBPD01000268
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
5631
5706
+
Glu
TTC
[ENA]
¢þ
>WENV170019731
BBPE01000345
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
19892
19817
-
Glu
TTC
[ENA]
¢þ
>WENV170558827
CXWL01093882
[CXWL] groundwater metagenome; biofilm material
3020
2945
-
Glu
TTC
[ENA]
¢þ
>WENV170577515
FSSH01000106
[FSSH] freshwater metagenome; drinking water
12054
12129
+
Glu
TTC
[ENA]
¢þ
>WENV170705800
LNAP01000352
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
56227
56302
+
Glu
TTC
[ENA]
¢þ
>WENV170705801
LNAP01000352
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
59761
59836
+
Glu
TTC
[ENA]
¢þ
>WENV170706316
LNAP01002010
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2275
2350
+
Glu
TTC
[ENA]
¢þ
>WENV170706602
LNAP01004549
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
7693
7768
+
Glu
TTC
[ENA]
¢þ
>WENV170708771
LNAQ01000873
[LNAQ] soil metagenome; soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
5327
5252
-
Glu
TTC
[ENA]
¢þ
>WENV170708856
LNFM01000007
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
498607
498532
-
Glu
TTC
[ENA]
¢þ
>WENV170711533
LNFM01005713
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
11674
11749
+
Glu
TTC
[ENA]
¢þ
>WENV170712278
LNFM01011740
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
3050
2975
-
Glu
TTC
[ENA]
¢þ
>WENV170713358
LNFM01029374
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1915
1840
-
Glu
TTC
[ENA]
¢þ
>WENV170961317
MLJW01000004
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
107913
107988
+
Glu
TTC
[ENA]
¢þ
>W141819369
JQMG01000001
Betaproteobacteria
Methylotenera sp. L2L1 [JQMG]
2214163
2214238
+
Glu
TTC
[ENA]
¡û
>W141819370
JQMG01000001
Betaproteobacteria
Methylotenera sp. L2L1 [JQMG]
2214333
2214408
+
Glu
TTC
[ENA]
¡û
>C09107589
CP001674
Betaproteobacteria
Methylovorus glucosotrophus SIP3-4 [CP001674]
1426886
1426811
-
Glu
TTC
[Ensembl]
¡û
>C09107814
CP001672
Betaproteobacteria
Methylotenera mobilis JLW8 [CP001672]
1182171
1182096
-
Glu
TTC
[Ensembl]
¡û
>C09107815
CP001672
Betaproteobacteria
Methylotenera mobilis JLW8 [CP001672]
1182036
1181961
-
Glu
TTC
[Ensembl]
¡û
>W1911623988
PQVH01000008
Betaproteobacteria
Methylotenera oryzisoli La3113 [PQVH]
226453
226528
+
Glu
TTC
[ENA]
¡û
>W1911623989
PQVH01000008
Betaproteobacteria
Methylotenera oryzisoli La3113 [PQVH]
226596
226671
+
Glu
TTC
[ENA]
¡û
>C151089455
CP012020
Betaproteobacteria
Methylophilus sp. TWE2 [CP012020]
1567448
1567523
+
Glu
TTC
[Ensembl]
¡û
>C151104074
LN794158
Betaproteobacteria
Candidatus Methylopumilus turicensis MMS-10A-171 [LN794158]
874479
874554
+
Glu
TTC
[Ensembl]
¡û
>ENV09001287
ABSR01000513
Freshwater sediment metagenome lwMethylamine_C1
3694
3619
-
Glu
TTC
[ENA]
¡û
>ENV09001288
ABSR01000513
Freshwater sediment metagenome lwMethylamine_C1
3550
3475
-
Glu
TTC
[ENA]
¡û
>ENV09001347
ABSR01002395
Freshwater sediment metagenome lwMethylamine_C1
898
823
-
Glu
TTC
[ENA]
¡û
>C10109352
CP002056
Betaproteobacteria
Methylotenera versatilis 301 [CP002056]
1538064
1538139
+
Glu
TTC
[Ensembl]
¡û
>C11114222
CP002252
Betaproteobacteria
Methylovorus sp. MP688 [CP002252]
1434482
1434407
-
Glu
TTC
[Ensembl]
¡û
>W1511431997
JUGE01000001
Betaproteobacteria
Methylotenera sp. N17 [JUGE]
1035145
1035070
-
Glu
TTC
[ENA]
¡û
>W1511432007
JUGF01000001
Betaproteobacteria
Methylotenera versatilis 7 [JUGF]
598200
598275
+
Glu
TTC
[ENA]
¡û
>W1511433406
JUHE01000001
Betaproteobacteria
Methylophilus sp. Q8 [JUHE]
2567997
2567922
-
Glu
TTC
[ENA]
¡û
>W1511433565
JUHH01000001
Betaproteobacteria
Methylotenera sp. G11 [JUHH]
445790
445715
-
Glu
TTC
[ENA]
¡û
>W1511433566
JUHH01000001
Betaproteobacteria
Methylotenera sp. G11 [JUHH]
445619
445544
-
Glu
TTC
[ENA]
¡û
>W1610740408
LMQQ01000001
Betaproteobacteria
Methylophilus sp. Leaf414 [LMQQ]
36836
36911
+
Glu
TTC
[ENA]
¡û
>W1610740490
LMQS01000001
Betaproteobacteria
Methylophilus sp. Leaf416 [LMQS]
36781
36856
+
Glu
TTC
[ENA]
¡û
>W1610740717
LMQX01000001
Betaproteobacteria
Methylophilus sp. Leaf459 [LMQX]
36186
36261
+
Glu
TTC
[ENA]
¡û
>W1611008614
LXUF01000001
Betaproteobacteria
Methylovorus sp. MM2 MM1 [LXUF]
1317136
1317211
+
Glu
TTC
[ENA]
¡û
>WENV079912
AATN01008203
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
782
859
+
Glu
TTC
[ENA]
>W1710513575
FNAG01000001
Gammaproteobacteria
Aquimonas voraii [FNAG]
913503
913428
-
Glu
TTC
[ENA]
¡û
>W1710520781
FNFX01000002
Betaproteobacteria
Methylophilus rhizosphaerae [FNFX]
33037
33112
+
Glu
TTC
[ENA]
¡û
Identical group No.834011 (1 seq.)
>ENV09001546
ABSR01027353
Freshwater sediment metagenome lwMethylamine_C1
487
560
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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