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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Glaucocystophyceae
Anticodon = ACG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.212216 (18 seq.)
>WENV180109273
OAPJ01056014
[OAPJ] marine metagenome; ENVO 00002150
72
145
+
Arg
ACG
[ENA]
¢þ
>WENV180398336
OBQA01010505
[OBQA] marine metagenome; PVDF and polycarbonate filters
335
408
+
Arg
ACG
[ENA]
¢þ
>WENV181393160
OFRX01062057
[OFRX] seawater metagenome; seawater
178
251
+
Arg
ACG
[ENA]
¢þ
>WENV170138386
CENW01112819
[CENW] marine metagenome genome assembly TARA_032_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
811
884
+
Arg
ACG
[ENA]
¢þ
>WENV170208034
CEPU01145739
[CEPU] marine metagenome genome assembly TARA_041_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
336
263
-
Arg
ACG
[ENA]
¢þ
>WENV170440072
CEUV01067972
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
76
3
-
Arg
ACG
[ENA]
¢þ
>WENV170832204
MDSZ01057677
[MDSZ] marine metagenome; seawater
59585
59658
+
Arg
ACG
[ENA]
¢þ
>WENV170853474
MDTA01170358
[MDTA] marine metagenome; seawater
1185
1258
+
Arg
ACG
[ENA]
¢þ
>CHL1810006808
KC153978
Rhodophyta
Calliarthron tuberculosum (KC153978)
36642
36715
+
Arg
ACG
[ENA]
¡û
>CHL1810008220
KC464603
Rhodophyta
Pyropia haitanensis (KC464603)
142265
142190
-
Arg
ACG
[ENA]
¡û
>CHL1810050638
MF101448
Rhodophyta
Lophocladia kuetzingii (MF101448)
167502
167427
-
Arg
ACG
[ENA]
¡û
>CHL1810057812
MG520331
Haptophyceae
Chrysochromulina parva (MG520331)
62345
62272
-
Arg
ACG
[ENA]
¡û
>CHL1810058635
MG598531
Rhodophyta
Grateloupia filicina (MG598531)
78042
78115
+
Arg
ACG
[ENA]
¡û
>CHL090100313
AF137379
Viridiplantae
Nephroselmis olivacea
124536
124610
+
Arg
ACG
[ENA]
¡û
>CHL090100319
AF137379
Viridiplantae
Nephroselmis olivacea
168390
168316
-
Arg
ACG
[ENA]
¡û
>CHL090100878
AP006715
Rhodophyta
Porphyra yezoensis
140424
140349
-
Arg
ACG
[ENA]
¡û
>CHL090101945
DQ291132
Viridiplantae
Oltmannsiellopsis viridis
55835
55761
-
Arg
ACG
[ENA]
¡û
>CHL090103153
U30821
Glaucocystophyceae
Cyanophora paradoxa
41703
41630
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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