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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Glaucocystophyceae
Anticodon = ACG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.326501 (5 seq.)
>WENV180109273
OAPJ01056014
[OAPJ] marine metagenome; ENVO 00002150
72
145
+
Arg
ACG
[ENA]
¢þ
>WENV180398336
OBQA01010505
[OBQA] marine metagenome; PVDF and polycarbonate filters
335
408
+
Arg
ACG
[ENA]
¢þ
>CHL090100313
AF137379
Viridiplantae
Nephroselmis olivacea
124536
124610
+
Arg
ACG
[ENA]
¡û
>CHL090100319
AF137379
Viridiplantae
Nephroselmis olivacea
168390
168316
-
Arg
ACG
[ENA]
¡û
>CHL090103153
U30821
Glaucocystophyceae
Cyanophora paradoxa
41703
41630
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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