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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Glaucocystophyceae
Anticodon = GAT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.194398 (27 seq.)
>WENV180045416
MOXS02120654
[MOXS] marine metagenome; 60 m water sample filtered on 0.2 um supor filter
89
14
-
Ile
GAT
[ENA]
¢þ
>WENV181315175
OFJN01004185
[OFJN] marine metagenome; sea ice
210
137
-
Ile
GAT
[ENA]
¢þ
>WENV181324579
OFLF01004844
[OFLF] marine metagenome; melt pond
744
669
-
Ile
GAT
[ENA]
¢þ
>WENV183627931
OOGL01084575
[OOGL] marine metagenome; sea ice
352
277
-
Ile
GAT
[ENA]
¢þ
>WENV183631395
OOGU01098967
[OOGU] marine metagenome; sea ice
134
209
+
Ile
GAT
[ENA]
¢þ
>WENV170022208
BCQK01001659
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
3486
3410
-
Ile
GAT
[ENA]
¢þ
>WENV170023954
BCQL01011196
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
1829
1902
+
Ile
GAT
[ENA]
¢þ
>WENV170468019
CEVF01004905
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2841
2916
+
Ile
GAT
[ENA]
¢þ
>WENV170785219
MDSP01002659
[MDSP] gut metagenome; Stomach gut content
2131
2204
+
Ile
GAT
[ENA]
¢þ
>WENV170785626
MDSP01195987
[MDSP] gut metagenome; Stomach gut content
245
318
+
Ile
GAT
[ENA]
¢þ
>WENV170786238
MDSQ01371041
[MDSQ] gut metagenome; Hindgut content
383
310
-
Ile
GAT
[ENA]
¢þ
>CHL1810002031
FM957154
Stramenopiles
Fucus vesiculosus (FM957154)
81447
81520
+
Ile
GAT
[ENA]
¡û
>CHL1810002045
FM957154
Stramenopiles
Fucus vesiculosus (FM957154)
3325
3252
-
Ile
GAT
[ENA]
¡û
>CHL1810002145
FP102296
Stramenopiles
Ectocarpus siliculosus (FP102296)
4807
4880
+
Ile
GAT
[ENA]
¡û
>CHL1810002166
FP102296
Stramenopiles
Ectocarpus siliculosus (FP102296)
55137
55064
-
Ile
GAT
[ENA]
¡û
>CHL1810005427
JQ405663
Stramenopiles
Saccharina japonica (JQ405663)
84124
84197
+
Ile
GAT
[ENA]
¡û
>CHL1810005446
JQ405663
Stramenopiles
Saccharina japonica (JQ405663)
3286
3213
-
Ile
GAT
[ENA]
¡û
>CHL1810017328
KP298002
Stramenopiles
Undaria pinnatifida (KP298002)
83943
84016
+
Ile
GAT
[ENA]
¡û
>CHL1810017347
KP298002
Stramenopiles
Undaria pinnatifida (KP298002)
3464
3391
-
Ile
GAT
[ENA]
¡û
>CHL1810018133
KP881334
Stramenopiles
Sargassum horneri (KP881334)
80622
80696
+
Ile
GAT
[ENA]
¡û
>CHL1810018146
KP881334
Stramenopiles
Sargassum horneri (KP881334)
3308
3234
-
Ile
GAT
[ENA]
¡û
>CHL1810019009
KR336545
Stramenopiles
Costaria costata (KR336545)
83860
83933
+
Ile
GAT
[ENA]
¡û
>CHL1810019026
KR336545
Stramenopiles
Costaria costata (KR336545)
3466
3393
-
Ile
GAT
[ENA]
¡û
>CHL1810042837
KY433579
Stramenopiles
Dictyopteris divaricata (KY433579)
80651
80724
+
Ile
GAT
[ENA]
¡û
>CHL1810042856
KY433579
Stramenopiles
Dictyopteris divaricata (KY433579)
3994
3921
-
Ile
GAT
[ENA]
¡û
>CHL090103122
U30821
Glaucocystophyceae
Cyanophora paradoxa
1889
1962
+
Ile
GAT
[ENA]
¡û
>CHL090103139
U30821
Glaucocystophyceae
Cyanophora paradoxa
115628
115555
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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