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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Glaucocystophyceae
Anticodon = GCA
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.484988 (14 seq.)
>WENV180366940
OBOE01000435
[OBOE] marine metagenome; ENVO:00002010
549
477
-
Cys
GCA
[ENA]
¢þ
>WENV181391589
OFRT01024954
[OFRT] seawater metagenome; seawater
534
464
-
Cys
GCA
[ENA]
¢þ
>WENV181393193
OFRX01069068
[OFRX] seawater metagenome; seawater
349
279
-
Cys
GCA
[ENA]
¢þ
>WENV183619086
OOFP01024722
[OOFP] marine metagenome; seawater
534
464
-
Cys
GCA
[ENA]
¢þ
>WENV183625510
OOGF01048680
[OOGF] marine metagenome; seawater
420
350
-
Cys
GCA
[ENA]
¢þ
>WENV170325212
CEST01003157
[CEST] marine metagenome genome assembly TARA_085_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
5386
5314
-
Cys
GCA
[ENA]
¢þ
>WENV170539793
CEWR01293259
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
386
314
-
Cys
GCA
[ENA]
¢þ
>WENV170568247
FLMP01025032
[FLMP] seawater metagenome; seawater
623
553
-
Cys
GCA
[ENA]
¢þ
>CHL1810002640
GU591327
Alveolata
Durinskia baltica CS-38 (GU591327)
106256
106326
+
Cys
GCA
[ENA]
¡û
>CHL1810013744
KJ958485
Stramenopiles
Thalassiosira weissflogii (KJ958485)
104944
104874
-
Cys
GCA
[ENA]
¡û
>CHL1810040732
KY407658
Viridiplantae
Pseudocharacium americanum (KY407658)
102143
102215
+
Cys
GCA
[ENA]
¡û
>CHL1810040760
KY407659
Viridiplantae
Ignatius tetrasporus (KY407659)
102101
102173
+
Cys
GCA
[ENA]
¡û
>CHL090103124
U30821
Glaucocystophyceae
Cyanophora paradoxa
7693
7765
+
Cys
GCA
[ENA]
¡û
>CHL090103141
U30821
Glaucocystophyceae
Cyanophora paradoxa
109824
109752
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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