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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Glaucocystophyceae
Anticodon = GTT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.420902 (8 seq.)
>CHL1810011409
KJ397925
Viridiplantae
Chlorella sorokiniana crs4 (KJ397925)
47301
47230
-
Asn
GTT
[ENA]
¡û
>CHL1810019911
KT199249
Viridiplantae
Mychonastes homosphaera CAUP H6502 (KT199249)
37434
37361
-
Asn
GTT
[ENA]
¡û
>CHL1810019939
KT199250
Viridiplantae
Kirchneriella aperta SAG 2004 (KT199250)
57825
57754
-
Asn
GTT
[ENA]
¡û
>CHL1810019972
KT199252
Viridiplantae
Chlorotetraedron incus SAG 43.81 (KT199252)
68233
68306
+
Asn
GTT
[ENA]
¡û
>CHL1810020001
KT199253
Viridiplantae
Bracteacoccus minor UTEX 66 (KT199253)
92014
92087
+
Asn
GTT
[ENA]
¡û
>CHL1810020075
KT199256
Viridiplantae
Pseudomuriella schumacherensis SAG 2137 (KT199256)
64475
64546
+
Asn
GTT
[ENA]
¡û
>CHL1810021578
KT625411
Viridiplantae
Mychonastes jurisii (KT625411)
16397
16470
+
Asn
GTT
[ENA]
¡û
>CHL090103137
U30821
Glaucocystophyceae
Cyanophora paradoxa
121670
121743
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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