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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Glaucocystophyceae
Anticodon = TAC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.435490 (7 seq.)
>W131063299
ANKO01000201
Cyanobacteriota
Oscillatoria sp. PCC 10802 [ANKO]
43842
43771
-
Val
TAC
[ENA]
¡û
>W08011520
ABVJ01000001
Cyanobacteriota
Cyanothece sp. PCC 7425 [ABVJ]
200440
200511
+
Val
TAC
[ENA]
¡û
>WENV170019063
BBPD01003457
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
3771
3700
-
Val
TAC
[ENA]
¢þ
>WENV170020694
BBPE01019202
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
771
700
-
Val
TAC
[ENA]
¢þ
>C09103603
CP001344
Cyanobacteriota
Cyanothece sp. PCC 7425 [CP001344]
1929267
1929196
-
Val
TAC
[Ensembl]
¡û
>CHL090103148
U30821
Glaucocystophyceae
Cyanophora paradoxa
64596
64525
-
Val
TAC
[ENA]
¡û
>W1511108004
JJML01000019
Cyanobacteriota
Neosynechococcus sphagnicola sy1 CAUP A 1101 [JJML]
102331
102402
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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