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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Glaucocystophyceae
Anticodon = TGC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.364426 (41 seq.)
>WENV181306722
OFIM01001711
[OFIM] marine metagenome; seawater
372
445
+
Ala
TGC
[ENA]
¢þ
>WENV181324185
OFLC01003126
[OFLC] marine metagenome; melt pond
603
676
+
Ala
TGC
[ENA]
¢þ
>WENV181325020
OFLI01001883
[OFLI] seawater metagenome; seawater
560
637
+
Ala
TGC
[ENA]
¢þ
>WENV183615501
OOEB01027771
[OOEB] marine metagenome; sea ice
476
403
-
Ala
TGC
[ENA]
¢þ
>WENV170134421
CENU01104565
[CENU] marine metagenome genome assembly TARA_025_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
50
124
+
Ala
TGC
[ENA]
¢þ
>WENV170519133
CEWE01207312
[CEWE] marine metagenome genome assembly TARA_124_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
570
496
-
Ala
TGC
[ENA]
¢þ
>WENV170532353
CEWO01035106
[CEWO] marine metagenome genome assembly TARA_145_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
295
372
+
Ala
TGC
[ENA]
¢þ
>WENV170704152
LKMJ01023810
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
3460
3385
-
Ala
TGC
[ENA]
¢þ
>CHL1810001915
FJ968740
Viridiplantae
Pedinomonas minor (FJ968740)
76588
76663
+
Ala
TGC
[ENA]
¡û
>CHL1810001924
FJ968740
Viridiplantae
Pedinomonas minor (FJ968740)
92151
92076
-
Ala
TGC
[ENA]
¡û
>CHL1810012818
KJ746600
Viridiplantae
Nephroselmis astigmatica (KJ746600)
84395
84468
+
Ala
TGC
[ENA]
¡û
>CHL1810012823
KJ746600
Viridiplantae
Nephroselmis astigmatica (KJ746600)
120539
120466
-
Ala
TGC
[ENA]
¡û
>CHL1810014798
KM462871
Viridiplantae
Lobosphaera incisa (KM462871)
1184
1259
+
Ala
TGC
[ENA]
¡û
>CHL1810017551
KP453743
Euglenozoa
Euglenaria anabaena UTEX 373 (KP453743)
86056
85981
-
Ala
TGC
[ENA]
¡û
>W1910175491
BJCD01000119
Cyanobacteriota
Planktothrix agardhii CCAP 1459/11A [BJCD]
282
355
+
Ala
TGC
[ENA]
¡û
>W1910194274
CZCZ01000004
Cyanobacteriota
Planktothrix rubescens 7821 [CZCZ]
731079
731006
-
Ala
TGC
[ENA]
¡û
>CHL090103123
U30821
Glaucocystophyceae
Cyanophora paradoxa
1966
2041
+
Ala
TGC
[ENA]
¡û
>CHL090103140
U30821
Glaucocystophyceae
Cyanophora paradoxa
115551
115476
-
Ala
TGC
[ENA]
¡û
>CHL090103381
DQ630521
Viridiplantae
Stigeoclonium helveticum
223830
3
-
Ala
TGC
[ENA]
¡û
>SRA1027062
SRR035086.54586
454 Sequencing (SRP001807)
28
104
+
Ala
TGC
[SRA]
>SRA1027789
SRR035086.192160
454 Sequencing (SRP001807)
173
249
+
Ala
TGC
[SRA]
>SRA1028367
SRR035086.309989
454 Sequencing (SRP001807)
246
322
+
Ala
TGC
[SRA]
>C131004228
CP003549
Cyanobacteriota
Rivularia sp. PCC 7116 [CP003549]
8135954
8135879
-
Ala
TGC
[Ensembl]
¡û
>C131004234
CP003549
Cyanobacteriota
Rivularia sp. PCC 7116 [CP003549]
6604594
6604519
-
Ala
TGC
[Ensembl]
¡û
>C131004236
CP003549
Cyanobacteriota
Rivularia sp. PCC 7116 [CP003549]
6598066
6597991
-
Ala
TGC
[Ensembl]
¡û
>ENV001366
AY827754
Environmental sample from ENV division of INSDC
79
156
+
Ala
TGC
[ENA]
>ENV001367
AY827757
Environmental sample from ENV division of INSDC
79
156
+
Ala
TGC
[ENA]
>ENV001371
AY827770
Environmental sample from ENV division of INSDC
107
184
+
Ala
TGC
[ENA]
>ENV001373
AY827780
Environmental sample from ENV division of INSDC
284
361
+
Ala
TGC
[ENA]
>ENV003952
DQ181748
Environmental sample from ENV division of INSDC
288
365
+
Ala
TGC
[ENA]
>ENV004939
EF368183
Environmental sample from ENV division of INSDC
253
330
+
Ala
TGC
[ENA]
>ENV004941
EF368184
Environmental sample from ENV division of INSDC
226
303
+
Ala
TGC
[ENA]
>ENV004943
EF368185
Environmental sample from ENV division of INSDC
219
296
+
Ala
TGC
[ENA]
>ENV005281
EU032366
Environmental sample from ENV division of INSDC
740
817
+
Ala
TGC
[ENA]
>ENV005284
EU032369
Environmental sample from ENV division of INSDC
728
805
+
Ala
TGC
[ENA]
>ENV005288
EU032373
Environmental sample from ENV division of INSDC
728
805
+
Ala
TGC
[ENA]
>ENV005294
EU032377
Environmental sample from ENV division of INSDC
1054
1129
+
Ala
TGC
[ENA]
>ENV005296
EU032384
Environmental sample from ENV division of INSDC
699
776
+
Ala
TGC
[ENA]
>ENV005444
EU233398
Environmental sample from ENV division of INSDC
324
401
+
Ala
TGC
[ENA]
>ENV005453
EU233409
Environmental sample from ENV division of INSDC
324
401
+
Ala
TGC
[ENA]
>ENV005455
EU233411
Environmental sample from ENV division of INSDC
324
401
+
Ala
TGC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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