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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Glaucocystophyceae
Anticodon = TGG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.286619 (21 seq.)
>W1711335807
MBRE01000017
Cyanobacteriota
Oscillatoriales cyanobacterium USR001 [MBRE]
51510
51437
-
Pro
TGG
[ENA]
¡û
>C025546
CP000393
Actinomycetota
Trichodesmium erythraeum [CP000393]
2502921
2502994
+
Pro
TGG
[Ensembl]
¡û
>WENV180380508
OBOQ01086204
[OBOQ] marine metagenome; Fridge
111
185
+
Pro
TGG
[ENA]
¢þ
>WENV180635978
OCRE01033895
[OCRE] marine metagenome; Seawater
187
114
-
Pro
TGG
[ENA]
¢þ
>WENV180879106
ODLZ01000044
[ODLZ] human metagenome; G_DNA_Tongue dorsum
15877
15801
-
Pro
TGG
[ENA]
¢þ
>WENV180890317
ODMO01000832
[ODMO] human metagenome; G_DNA_Tongue dorsum
10703
10627
-
Pro
TGG
[ENA]
¢þ
>WENV180897121
ODNI01006668
[ODNI] human metagenome; G_DNA_Tongue dorsum
162
86
-
Pro
TGG
[ENA]
¢þ
>WENV180929728
ODTN01010976
[ODTN] human metagenome; G_DNA_Tongue dorsum
1615
1691
+
Pro
TGG
[ENA]
¢þ
>WENV180953343
ODUI01021485
[ODUI] human metagenome; G_DNA_Tongue dorsum
1155
1231
+
Pro
TGG
[ENA]
¢þ
>WENV170274830
CERM01045266
[CERM] marine metagenome genome assembly TARA_067_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
170
243
+
Pro
TGG
[ENA]
¢þ
>CHL1810000551
AP012987
Rhodophyta
Porphyridium purpureum (AP012987)
129622
129697
+
Pro
TGG
[ENA]
¡û
>CHL1810045175
KY709209
Rhodophyta
Bulboplastis apyrenoidosa NIES-2742 (KY709209)
594756
594683
-
Pro
TGG
[ENA]
¡û
>W09100663
AABK04000012
Cyanobacteriota
Trichodesmium erythraeum IMS101 [AABK]
260065
260138
+
Pro
TGG
[ENA]
¡û
>W1910613511
LGSU01000445
Cyanobacteriota
Hydrocoleum sp. CS-953 [LGSU]
808
733
-
Pro
TGG
[ENA]
¡û
>CHL090103126
U30821
Glaucocystophyceae
Cyanophora paradoxa
22308
22381
+
Pro
TGG
[ENA]
¡û
>W1511564139
LADK01008884
Cyanobacteriota
Trichodesmium erythraeum 21-75 [LADK]
12312
12385
+
Pro
TGG
[ENA]
¡û
>W11164201
AFJC01000002
Cyanobacteriota
Microcoleus vaginatus FGP-2 [AFJC]
168407
168334
-
Pro
TGG
[ENA]
¡û
>W1610516145
FMBL01000001
Actinomycetota
Bifidobacterium commune [FMBL]
724222
724148
-
Pro
TGG
[ENA]
¡û
>W1611066514
MBRE01000017
Cyanobacteriota
Oscillatoriales cyanobacterium USR001 [MBRE]
51510
51437
-
Pro
TGG
[ENA]
¡û
>W1710501436
FMBL01000001
Actinomycetota
Bifidobacterium commune [FMBL]
724222
724148
-
Pro
TGG
[ENA]
¡û
>W1710540132
FNWN01000005
Bacillota
Selenomonas ruminantium [FNWN]
136715
136791
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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