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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Glaucocystophyceae
Anticodon = TTC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.287395 (58 seq.)
>w000978
AAVW01000017
Cyanobacteriota
Nodularia spumigena CCY9414 [AAVW]
42394
42319
-
Glu
TTC
[ENA]
¡û
>W08012985
ABRV01000018
Cyanobacteriota
Synechococcus sp. PCC 7335 [ABRV]
486862
486790
-
Glu
TTC
[ENA]
¡û
>W08012998
ABVJ01000018
Cyanobacteriota
Cyanothece sp. PCC 7425 [ABVJ]
49597
49669
+
Glu
TTC
[ENA]
¡û
>CHL1830001783
KY427338
Viridiplantae
Deparia lancea (KY427338)
27429
27357
-
Glu
TTC
[ENA]
¡û
>CHL1830001787
KY427340
Viridiplantae
Deparia viridifrons (KY427340)
27746
27674
-
Glu
TTC
[ENA]
¡û
>CHL1830001769
KY427331
Viridiplantae
Asplenium pekinense (KY427331)
27693
27621
-
Glu
TTC
[ENA]
¡û
>CHL1830001771
KY427332
Viridiplantae
Asplenium prolongatum (KY427332)
27385
27313
-
Glu
TTC
[ENA]
¡û
>CHL1830001789
KY427341
Viridiplantae
Diplaziopsis cavaleriana (KY427341)
27849
27777
-
Glu
TTC
[ENA]
¡û
>CHL1830001791
KY427342
Viridiplantae
Diplaziopsis javanica (KY427342)
27915
27843
-
Glu
TTC
[ENA]
¡û
>CHL1830001805
KY427349
Viridiplantae
Homalosorus pycnocarpos (KY427349)
27893
27821
-
Glu
TTC
[ENA]
¡û
>CHL1830001807
KY427350
Viridiplantae
Hymenasplenium unilaterale (KY427350)
27839
27767
-
Glu
TTC
[ENA]
¡û
>CHL1830001815
KY427354
Viridiplantae
Onoclea sensibilis (KY427354)
27768
27696
-
Glu
TTC
[ENA]
¡û
>CHL1830001819
KY427356
Viridiplantae
Rhachidosorus consimilis (KY427356)
27874
27802
-
Glu
TTC
[ENA]
¡û
>C183000148
AP018254
Cyanobacteriota
Calothrix sp. NIES-3974 [AP018254]
2514808
2514880
+
Glu
TTC
-
¡û
>C183000523
CP018092
Cyanobacteriota
Thermostichus lividus PCC 6715 [CP018092]
1184472
1184396
-
Glu
TTC
-
¡û
>C183000734
CP020114
Cyanobacteriota
Nodularia spumigena UHCC 0039 [CP020114]
405000
404928
-
Glu
TTC
-
¡û
>C193000009
AP017560
Cyanobacteriota
Pseudanabaena sp. ABRG5-3 [AP017560]
1985210
1985282
+
Glu
TTC
-
¡û
>C193000010
AP017560
Cyanobacteriota
Pseudanabaena sp. ABRG5-3 [AP017560]
1985373
1985445
+
Glu
TTC
-
¡û
>C193000046
AP018318
Cyanobacteriota
Nostoc sp. HK-01 NIES-2109 [AP018318]
4719450
4719523
+
Glu
TTC
-
¡û
>C193000047
AP018318
Cyanobacteriota
Nostoc sp. HK-01 NIES-2109 [AP018318]
4719571
4719643
+
Glu
TTC
-
¡û
>C193001413
CP032152
Cyanobacteriota
Thermosynechococcus vestitus E542 [CP032152]
1769237
1769313
+
Glu
TTC
-
¡û
>W09300288
ABYK01000067
Cyanobacteriota
Limnospira maxima CS-328 [ABYK]
20045
20118
+
Glu
TTC
[ENA]
¡û
>W143000128
AFXD01000027
Cyanobacteriota
Arthrospira platensis C1 [AFXD]
141415
141488
+
Glu
TTC
[ENA]
¡û
>W143000835
ALVO01000008
Cyanobacteriota
Geminocystis herdmanii PCC 6308 [ALVO]
43928
44000
+
Glu
TTC
[ENA]
¡û
>W143001888
AVFZ01000165
Cyanobacteriota
Planktothrix prolifica NIVA-CYA 98 [AVFZ]
24467
24392
-
Glu
TTC
[ENA]
¡û
>W143000524
AJTX01001442
Cyanobacteriota
Prochlorothrix hollandica PCC 9006 [AJTX]
604
532
-
Glu
TTC
[ENA]
¡û
>W143000833
ALVK01000018
Cyanobacteriota
Pseudanabaena sp. PCC 6802 [ALVK]
235417
235345
-
Glu
TTC
[ENA]
¡û
>W143000837
ALVU02000001
Cyanobacteriota
Synechocystis sp. PCC 7509 [ALVU]
2942888
2942816
-
Glu
TTC
[ENA]
¡û
>W143000839
ALVV02000073
Cyanobacteriota
Leptolyngbya sp. PCC 6406 [ALVV]
57738
57810
+
Glu
TTC
[ENA]
¡û
>W143000851
ALWB01000062
Cyanobacteriota
Pseudanabaena biceps PCC 7429 [ALWB]
18629
18701
+
Glu
TTC
[ENA]
¡û
>W143002804
AWNH01000098
Cyanobacteriota
Leptolyngbya sp. Heron Island J [AWNH]
78017
77945
-
Glu
TTC
[ENA]
¡û
>W143005395
CAIY01000038
Cyanobacteriota
Richelia intracellularis HH01 [CAIY]
26730
26657
-
Glu
TTC
[ENA]
¡û
>W143016742
JMKF01000063
Cyanobacteriota
[Leptolyngbya] sp. JSC-1 JSC-1 [JMKF]
22425
22353
-
Glu
TTC
[ENA]
¡û
>C09300065
CP001344
Cyanobacteriota
Cyanothece sp. PCC 7425 [CP001344]
3574683
3574611
-
Glu
TTC
[Ensembl]
¡û
>CHL090200084
AY958086
Viridiplantae
Zygnema circumcarinatum
30776
30704
-
Glu
TTC
[ENA]
¡û
>CHL090200150
U30821
Glaucocystophyceae
Cyanophora paradoxa
13172
13097
-
Glu
TTC
[ENA]
¡û
>W11301591
AFJC01000033
Cyanobacteriota
Microcoleus vaginatus FGP-2 [AFJC]
5676
5748
+
Glu
TTC
[ENA]
¡û
>W11302008
CACA01000306
Cyanobacteriota
Kamptonema sp. PCC 6506 PCC 6506 [CACA]
11065
10990
-
Glu
TTC
[ENA]
¡û
>C163000500
CP012036
Cyanobacteriota
Nostoc piscinale CENA21 [CP012036]
3696288
3696362
+
Glu
TTC
[Ensembl]
¡û
>C133000107
CP003558
Cyanobacteriota
Synechococcus sp. PCC 6312 [CP003558]
2624803
2624878
+
Glu
TTC
[Ensembl]
¡û
>C133000122
CP003607
Cyanobacteriota
Oscillatoria acuminata PCC 6304 [CP003607]
443800
443874
+
Glu
TTC
[Ensembl]
¡û
>C133000093
CP003548
Cyanobacteriota
Nostoc sp. PCC 7107 [CP003548]
3493811
3493738
-
Glu
TTC
[Ensembl]
¡û
>C133000094
CP003548
Cyanobacteriota
Nostoc sp. PCC 7107 [CP003548]
3493690
3493617
-
Glu
TTC
[Ensembl]
¡û
>C133000109
CP003591
Cyanobacteriota
Geitlerinema sp. PCC 7407 [CP003591]
4348855
4348927
+
Glu
TTC
[Ensembl]
¡û
>C133000117
CP003597
Cyanobacteriota
Chroococcidiopsis thermalis PCC 7203 [CP003597]
5073132
5073204
+
Glu
TTC
[Ensembl]
¡û
>C133000136
CP003620
Cyanobacteriota
Crinalium epipsammum PCC 9333 [CP003620]
2046853
2046780
-
Glu
TTC
[Ensembl]
¡û
>C133000149
CP003646
Cyanobacteriota
Gloeocapsa sp. PCC 7428 [CP003646]
3764739
3764811
+
Glu
TTC
[Ensembl]
¡û
>W1630019705
LWRO01000009
Cyanobacteriota
Geitlerinema sp. BBD BBD 1991-9 [LWRO]
24922
24996
+
Glu
TTC
[ENA]
¡û
>W1630019706
LWRO01000009
Cyanobacteriota
Geitlerinema sp. BBD BBD 1991-9 [LWRO]
25199
25273
+
Glu
TTC
[ENA]
¡û
>W1630021559
MBRD01000008
Cyanobacteriota
Nostoc sp. MBR 210 [MBRD]
487110
487184
+
Glu
TTC
[ENA]
¡û
>W133001316
ANFQ01000078
Cyanobacteriota
Baaleninema simplex PCC 7105 [ANFQ]
30705
30631
-
Glu
TTC
[ENA]
¡û
>W133001317
ANFQ01000078
Cyanobacteriota
Baaleninema simplex PCC 7105 [ANFQ]
30442
30368
-
Glu
TTC
[ENA]
¡û
>W133000930
AJUB01000011
Cyanobacteriota
Leptolyngbyaceae cyanobacterium JSC-12 JSC-12 [AJUB]
795922
795994
+
Glu
TTC
[ENA]
¡û
>W133000947
ALVN01000001
Cyanobacteriota
Leptolyngbya sp. PCC 7375 [ALVN]
4536644
4536572
-
Glu
TTC
[ENA]
¡û
>W133000952
ALVP01000027
Cyanobacteriota
Nodosilinea nodulosa PCC 7104 [ALVP]
88702
88630
-
Glu
TTC
[ENA]
¡û
>W133001373
ANKN01000144
Cyanobacteriota
Prochlorothrix hollandica PCC 9006 [ANKN]
10187
10115
-
Glu
TTC
[ENA]
¡û
>W133001381
ANKO01000083
Cyanobacteriota
Oscillatoria sp. PCC 10802 [ANKO]
47094
47022
-
Glu
TTC
[ENA]
¡û
>W133001984
AOFE01000011
Cyanobacteriota
Nodularia spumigena CCY9414 [AOFE]
233145
233073
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK