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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Groundwater metagenome 4000601.lucy.pga.C1
Anticodon = ACG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.273504 (50 seq.)
>W1710863173
LMEX01000001
Gammaproteobacteria
Rhodanobacter sp. Root480 [LMEX]
522862
522938
+
Arg
ACG
[ENA]
¡û
>W1710864951
LMGH01000010
Gammaproteobacteria
Rhodanobacter sp. Root561 [LMGH]
75857
75933
+
Arg
ACG
[ENA]
¡û
>W1710865660
LMGW01000001
Gammaproteobacteria
Rhodanobacter sp. Root627 [LMGW]
552966
553042
+
Arg
ACG
[ENA]
¡û
>W1710866701
LMHR01000085
Gammaproteobacteria
Rhodanobacter sp. Root179 [LMHR]
111721
111797
+
Arg
ACG
[ENA]
¡û
>W1710880543
LMSK01000001
Gammaproteobacteria
Rhodanobacter sp. Soil772 [LMSK]
493774
493850
+
Arg
ACG
[ENA]
¡û
>W1711147392
LVJP01003696
Gammaproteobacteria
Rhodanobacter denitrificans [LVJP]
11333
11409
+
Arg
ACG
[ENA]
¡û
>W1711147486
LVJR01000021
Gammaproteobacteria
Rhodanobacter sp. FW104-R8 [LVJR]
55565
55489
-
Arg
ACG
[ENA]
¡û
>W1711147535
LVJS01000052
Gammaproteobacteria
Rhodanobacter thiooxydans [LVJS]
55002
55078
+
Arg
ACG
[ENA]
¡û
>W1711147588
LVJT01000088
Gammaproteobacteria
Rhodanobacter sp. FW510-T8 [LVJT]
7867
7791
-
Arg
ACG
[ENA]
¡û
>W1711147607
LVJU01000005
Gammaproteobacteria
Rhodanobacter sp. FW510-R10 [LVJU]
43736
43812
+
Arg
ACG
[ENA]
¡û
>W1711386223
MEFB01000003
Gammaproteobacteria
Rhodanobacter sp. SCN 67-45 [MEFB]
104124
104048
-
Arg
ACG
[ENA]
¡û
>W1711387156
MEGJ01000004
Gammaproteobacteria
Rhodanobacter sp. SCN 69-32 [MEGJ]
51065
51141
+
Arg
ACG
[ENA]
¡û
>W1711503655
MKTU01000036
Gammaproteobacteria
Rhodanobacter sp. 67-28 [MKTU]
76694
76618
-
Arg
ACG
[ENA]
¡û
>W1711506089
MKWC01000008
Gammaproteobacteria
Rhodanobacter sp. 68-29 [MKWC]
151296
151372
+
Arg
ACG
[ENA]
¡û
>W1711751321
MUNQ01000022
Gammaproteobacteria
Rhodanobacter sp. C05 [MUNQ]
14382
14306
-
Arg
ACG
[ENA]
¡û
>W1711751343
MUNR01000009
Gammaproteobacteria
Rhodanobacter sp. C01 [MUNR]
79009
78933
-
Arg
ACG
[ENA]
¡û
>W1711751434
MUNT01000006
Gammaproteobacteria
Rhodanobacter sp. C03 [MUNT]
84680
84756
+
Arg
ACG
[ENA]
¡û
>W1711751465
MUNU01000003
Gammaproteobacteria
Rhodanobacter sp. B05 [MUNU]
86711
86787
+
Arg
ACG
[ENA]
¡û
>W1711751534
MUNV01000018
Gammaproteobacteria
Rhodanobacter sp. B04 [MUNV]
45594
45670
+
Arg
ACG
[ENA]
¡û
>W131218965
ATYD01000217
Gammaproteobacteria
Rhodanobacter sp. OR444 [ATYD]
297
373
+
Arg
ACG
[ENA]
¡û
>W131219014
ATYF01000001
Gammaproteobacteria
Rhodanobacter sp. OR92 [ATYF]
220239
220315
+
Arg
ACG
[ENA]
¡û
>WENV180099634
NMRC01022055
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
3668
3592
-
Arg
ACG
[ENA]
¢þ
>WENV181401800
OFTX01007288
[OFTX] sludge metagenome; sludge
1336
1260
-
Arg
ACG
[ENA]
¢þ
>W141151872
AXBJ01000003
Gammaproteobacteria
Rhodanobacter sp. OR87 [AXBJ]
231487
231563
+
Arg
ACG
[ENA]
¡û
>WENV170639794
JFJP01008021
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
7400
7324
-
Arg
ACG
[ENA]
¢þ
>WENV170705496
LNAO01001092
[LNAO] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
931
855
-
Arg
ACG
[ENA]
¢þ
>WENV170706006
LNAP01000839
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
7849
7925
+
Arg
ACG
[ENA]
¢þ
>W1910821940
MWIO01000032
Gammaproteobacteria
Rhodanobacter lindaniclasticus DSM 17932 [MWIO]
62551
62627
+
Arg
ACG
[ENA]
¡û
>W1910841568
NADW01000002
Bacillota
Bacillus sp. SRB_336 [NADW]
1162989
1162913
-
Arg
ACG
[ENA]
¡û
>W1810071352
PEER01000009
Gammaproteobacteria
Rhodanobacter sp. TND4EH1 [PEER]
522734
522810
+
Arg
ACG
[ENA]
¡û
>W1810514394
QBUW01000016
Gammaproteobacteria
Rhodanobacter thiooxydans CR1 [QBUW]
14444
14368
-
Arg
ACG
[ENA]
¡û
>W1810591921
QFWQ01000003
Gammaproteobacteria
Rhodanobacter denitrificans Yn1 [QFWQ]
285447
285371
-
Arg
ACG
[ENA]
¡û
>ENV09004014
ADIG01001044
Groundwater metagenome 4000601.lucy.pga.C1
164188
164264
+
Arg
ACG
[ENA]
¡û
>W11180887
AGIL01000007
Gammaproteobacteria
Rhodanobacter denitrificans 2APBS1 [AGIL]
79075
79151
+
Arg
ACG
[ENA]
¡û
>W121071262
AJXT01000043
Gammaproteobacteria
Rhodanobacter spathiphylli B39 [AJXT]
81595
81519
-
Arg
ACG
[ENA]
¡û
>W121071303
AJXU01000075
Gammaproteobacteria
Rhodanobacter fulvus Jip2 [AJXU]
54149
54073
-
Arg
ACG
[ENA]
¡û
>W121071336
AJXV01000030
Gammaproteobacteria
Rhodanobacter denitrificans 116-2 [AJXV]
7608
7684
+
Arg
ACG
[ENA]
¡û
>W121071371
AJXW01000020
Gammaproteobacteria
Rhodanobacter thiooxydans LCS2 [AJXW]
104001
104077
+
Arg
ACG
[ENA]
¡û
>C131003727
CP003470
Gammaproteobacteria
Rhodanobacter denitrificans 2APBS1 [CP003470]
2436143
2436067
-
Arg
ACG
-
¡û
>W1610725519
LMEX01000001
Gammaproteobacteria
Rhodanobacter sp. Root480 [LMEX]
522862
522938
+
Arg
ACG
[ENA]
¡û
>W1610727297
LMGH01000010
Gammaproteobacteria
Rhodanobacter sp. Root561 [LMGH]
75857
75933
+
Arg
ACG
[ENA]
¡û
>W1610728006
LMGW01000001
Gammaproteobacteria
Rhodanobacter sp. Root627 [LMGW]
552966
553042
+
Arg
ACG
[ENA]
¡û
>W1610729047
LMHR01000085
Gammaproteobacteria
Rhodanobacter sp. Root179 [LMHR]
111721
111797
+
Arg
ACG
[ENA]
¡û
>W1610742889
LMSK01000001
Gammaproteobacteria
Rhodanobacter sp. Soil772 [LMSK]
493774
493850
+
Arg
ACG
[ENA]
¡û
>W1610958345
LVJP01003696
Gammaproteobacteria
Rhodanobacter denitrificans [LVJP]
11333
11409
+
Arg
ACG
[ENA]
¡û
>W1610958439
LVJR01000021
Gammaproteobacteria
Rhodanobacter sp. FW104-R8 [LVJR]
55565
55489
-
Arg
ACG
[ENA]
¡û
>W1610958488
LVJS01000052
Gammaproteobacteria
Rhodanobacter thiooxydans [LVJS]
55002
55078
+
Arg
ACG
[ENA]
¡û
>W1610958541
LVJT01000088
Gammaproteobacteria
Rhodanobacter sp. FW510-T8 [LVJT]
7867
7791
-
Arg
ACG
[ENA]
¡û
>W1610958560
LVJU01000005
Gammaproteobacteria
Rhodanobacter sp. FW510-R10 [LVJU]
43736
43812
+
Arg
ACG
[ENA]
¡û
>W1710592210
FRCH01000001
Gammaproteobacteria
Rhodanobacter sp. OK091 [FRCH]
67612
67536
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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