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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Groundwater metagenome 4000601.lucy.pga.C1
Anticodon = CAA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.118178 (10 seq.)
>W141258909
CBXX010000019
Betaproteobacteria
Herbaspirillum sp. RV1423 [CBXX]
24449
24535
+
Leu
CAA
[ENA]
¡û
>WENV170565530
FJVX01001341
[FJVX] metagenome; soil
840
754
-
Leu
CAA
[ENA]
¢þ
>C181071840
CP022736
Betaproteobacteria
Herbaspirillum sp. meg3 [CP022736]
3596098
3596184
+
Leu
CAA
-
¡û
>W1810887523
QUQN01000003
Betaproteobacteria
Herbaspirillum sp. 3R-3a1 [QUQN]
755814
755728
-
Leu
CAA
[ENA]
¡û
>C151082367
CP011409
Betaproteobacteria
Herbaspirillum hiltneri N3 [CP011409]
3804312
3804398
+
Leu
CAA
-
¡û
>ENV09004075
ADIG01004361
Groundwater metagenome 4000601.lucy.pga.C1
117
203
+
Leu
CAA
[ENA]
¡û
>W1511683789
LFLS01000038
Betaproteobacteria
Herbaspirillum autotrophicum IAM 14942 [LFLS]
33930
33844
-
Leu
CAA
[ENA]
¡û
>W1511683854
LFLU01000001
Betaproteobacteria
Herbaspirillum rhizosphaerae UMS-37 [LFLU]
400542
400456
-
Leu
CAA
[ENA]
¡û
>W121061949
AJHH01000004
Betaproteobacteria
Herbaspirillum lusitanum P6-12 [AJHH]
227
141
-
Leu
CAA
[ENA]
¡û
>W121086382
AKJW01000059
Betaproteobacteria
Herbaspirillum sp. CF444 [AKJW]
86794
86708
-
Leu
CAA
[ENA]
¡û
Identical group No.153991 (31 seq.)
>W1710864975
LMGH01000012
Gammaproteobacteria
Rhodanobacter sp. Root561 [LMGH]
57294
57379
+
Leu
CAA
[ENA]
¡û
>W1710866687
LMHR01000038
Gammaproteobacteria
Rhodanobacter sp. Root179 [LMHR]
17039
17124
+
Leu
CAA
[ENA]
¡û
>W1710880569
LMSK01000001
Gammaproteobacteria
Rhodanobacter sp. Soil772 [LMSK]
354084
353999
-
Leu
CAA
[ENA]
¡û
>W1711147398
LVJP01003721
Gammaproteobacteria
Rhodanobacter denitrificans [LVJP]
4347
4432
+
Leu
CAA
[ENA]
¡û
>W1711147496
LVJR01000025
Gammaproteobacteria
Rhodanobacter sp. FW104-R8 [LVJR]
43171
43256
+
Leu
CAA
[ENA]
¡û
>W1711147519
LVJS01000019
Gammaproteobacteria
Rhodanobacter thiooxydans [LVJS]
18220
18135
-
Leu
CAA
[ENA]
¡û
>W1711147567
LVJT01000009
Gammaproteobacteria
Rhodanobacter sp. FW510-T8 [LVJT]
8081
8166
+
Leu
CAA
[ENA]
¡û
>W1711147622
LVJU01000021
Gammaproteobacteria
Rhodanobacter sp. FW510-R10 [LVJU]
94937
94852
-
Leu
CAA
[ENA]
¡û
>W1711421708
MHZQ01000657
Gammaproteobacteria
Rhodanobacter sp. RIFOXYA1_FULL_67_6 [MHZQ]
1474
1559
+
Leu
CAA
[ENA]
¡û
>W1711503677
MKTU01000080
Gammaproteobacteria
Rhodanobacter sp. 67-28 [MKTU]
15947
15862
-
Leu
CAA
[ENA]
¡û
>W1711751481
MUNU01000011
Gammaproteobacteria
Rhodanobacter sp. B05 [MUNU]
63005
62920
-
Leu
CAA
[ENA]
¡û
>W131218949
ATYD01000125
Gammaproteobacteria
Rhodanobacter sp. OR444 [ATYD]
7019
7104
+
Leu
CAA
[ENA]
¡û
>W131219028
ATYF01000001
Gammaproteobacteria
Rhodanobacter sp. OR92 [ATYF]
92632
92547
-
Leu
CAA
[ENA]
¡û
>WENV183736514
PJUC01007918
[PJUC] soil metagenome; Soil enriched on filter paper
215
130
-
Leu
CAA
[ENA]
¢þ
>WENV170578052
FSSH01007892
[FSSH] freshwater metagenome; drinking water
1653
1568
-
Leu
CAA
[ENA]
¢þ
>W1910821932
MWIO01000026
Gammaproteobacteria
Rhodanobacter lindaniclasticus DSM 17932 [MWIO]
163262
163177
-
Leu
CAA
[ENA]
¡û
>W1810071373
PEER01000009
Gammaproteobacteria
Rhodanobacter sp. TND4EH1 [PEER]
406897
406812
-
Leu
CAA
[ENA]
¡û
>W1810591915
QFWQ01000003
Gammaproteobacteria
Rhodanobacter denitrificans Yn1 [QFWQ]
387606
387691
+
Leu
CAA
[ENA]
¡û
>ENV09004044
ADIG01001060
Groundwater metagenome 4000601.lucy.pga.C1
63499
63584
+
Leu
CAA
[ENA]
¡û
>W11180908
AGIL01000013
Gammaproteobacteria
Rhodanobacter denitrificans 2APBS1 [AGIL]
42209
42294
+
Leu
CAA
[ENA]
¡û
>W121071251
AJXT01000029
Gammaproteobacteria
Rhodanobacter spathiphylli B39 [AJXT]
55503
55588
+
Leu
CAA
[ENA]
¡û
>W121071330
AJXV01000014
Gammaproteobacteria
Rhodanobacter denitrificans 116-2 [AJXV]
32771
32856
+
Leu
CAA
[ENA]
¡û
>C131003713
CP003470
Gammaproteobacteria
Rhodanobacter denitrificans 2APBS1 [CP003470]
2557464
2557549
+
Leu
CAA
-
¡û
>W1610727321
LMGH01000012
Gammaproteobacteria
Rhodanobacter sp. Root561 [LMGH]
57294
57379
+
Leu
CAA
[ENA]
¡û
>W1610729033
LMHR01000038
Gammaproteobacteria
Rhodanobacter sp. Root179 [LMHR]
17039
17124
+
Leu
CAA
[ENA]
¡û
>W1610742915
LMSK01000001
Gammaproteobacteria
Rhodanobacter sp. Soil772 [LMSK]
354084
353999
-
Leu
CAA
[ENA]
¡û
>W1610958351
LVJP01003721
Gammaproteobacteria
Rhodanobacter denitrificans [LVJP]
4347
4432
+
Leu
CAA
[ENA]
¡û
>W1610958449
LVJR01000025
Gammaproteobacteria
Rhodanobacter sp. FW104-R8 [LVJR]
43171
43256
+
Leu
CAA
[ENA]
¡û
>W1610958472
LVJS01000019
Gammaproteobacteria
Rhodanobacter thiooxydans [LVJS]
18220
18135
-
Leu
CAA
[ENA]
¡û
>W1610958520
LVJT01000009
Gammaproteobacteria
Rhodanobacter sp. FW510-T8 [LVJT]
8081
8166
+
Leu
CAA
[ENA]
¡û
>W1610958575
LVJU01000021
Gammaproteobacteria
Rhodanobacter sp. FW510-R10 [LVJU]
94937
94852
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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