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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Groundwater metagenome 4000601.lucy.pga.C1
Anticodon = CAC
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.654993 (58 seq.)
>W1710864974
LMGH01000011
Gammaproteobacteria
Rhodanobacter sp. Root561 [LMGH]
126088
126014
-
Val
CAC
[ENA]
¡û
>W1710866723
LMHR01000088
Gammaproteobacteria
Rhodanobacter sp. Root179 [LMHR]
25543
25469
-
Val
CAC
[ENA]
¡û
>W1711147397
LVJP01003711
Gammaproteobacteria
Rhodanobacter denitrificans [LVJP]
8475
8401
-
Val
CAC
[ENA]
¡û
>W1711147464
LVJQ01002916
Gammaproteobacteria
Rhodanobacter sp. FW104-R5 [LVJQ]
22220
22146
-
Val
CAC
[ENA]
¡û
>W1711147514
LVJR01000109
Gammaproteobacteria
Rhodanobacter sp. FW104-R8 [LVJR]
191
117
-
Val
CAC
[ENA]
¡û
>W1711147527
LVJS01000034
Gammaproteobacteria
Rhodanobacter thiooxydans [LVJS]
50366
50292
-
Val
CAC
[ENA]
¡û
>W1711147570
LVJT01000009
Gammaproteobacteria
Rhodanobacter sp. FW510-T8 [LVJT]
114583
114657
+
Val
CAC
[ENA]
¡û
>W1711147633
LVJU01000073
Gammaproteobacteria
Rhodanobacter sp. FW510-R10 [LVJU]
11603
11677
+
Val
CAC
[ENA]
¡û
>W1711147694
LVJV01001536
Gammaproteobacteria
Rhodanobacter sp. FW510-R12 [LVJV]
4511
4585
+
Val
CAC
[ENA]
¡û
>W1711147708
LVJV01001811
Gammaproteobacteria
Rhodanobacter sp. FW510-R12 [LVJV]
2610
2684
+
Val
CAC
[ENA]
¡û
>W1711386238
MEFB01000008
Gammaproteobacteria
Rhodanobacter sp. SCN 67-45 [MEFB]
17239
17165
-
Val
CAC
[ENA]
¡û
>W1711503647
MKTU01000028
Gammaproteobacteria
Rhodanobacter sp. 67-28 [MKTU]
15559
15485
-
Val
CAC
[ENA]
¡û
>W1711751297
MUNQ01000009
Gammaproteobacteria
Rhodanobacter sp. C05 [MUNQ]
48095
48169
+
Val
CAC
[ENA]
¡û
>W1711751342
MUNR01000009
Gammaproteobacteria
Rhodanobacter sp. C01 [MUNR]
328256
328330
+
Val
CAC
[ENA]
¡û
>W1711751432
MUNT01000005
Gammaproteobacteria
Rhodanobacter sp. C03 [MUNT]
103642
103716
+
Val
CAC
[ENA]
¡û
>W1711751517
MUNV01000007
Gammaproteobacteria
Rhodanobacter sp. B04 [MUNV]
214936
215010
+
Val
CAC
[ENA]
¡û
>W131218939
ATYD01000013
Gammaproteobacteria
Rhodanobacter sp. OR444 [ATYD]
16874
16948
+
Val
CAC
[ENA]
¡û
>W131219043
ATYF01000012
Gammaproteobacteria
Rhodanobacter sp. OR92 [ATYF]
123939
124013
+
Val
CAC
[ENA]
¡û
>WENV180028595
FTJE01090476
[FTJE] metagenome; soil
75
1
-
Val
CAC
[ENA]
¢þ
>WENV180035962
FTLB01078345
[FTLB] metagenome; soil
72
146
+
Val
CAC
[ENA]
¢þ
>WENV180099463
NMRC01006476
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
77
3
-
Val
CAC
[ENA]
¢þ
>W141151903
AXBJ01000020
Gammaproteobacteria
Rhodanobacter sp. OR87 [AXBJ]
161
87
-
Val
CAC
[ENA]
¡û
>WENV183696698
OULU01000009
[OULU] metagenome; soil
204
278
+
Val
CAC
[ENA]
¢þ
>WENV183736636
PJUC01027665
[PJUC] soil metagenome; Soil enriched on filter paper
352
278
-
Val
CAC
[ENA]
¢þ
>W1910821931
MWIO01000024
Gammaproteobacteria
Rhodanobacter lindaniclasticus DSM 17932 [MWIO]
1262
1188
-
Val
CAC
[ENA]
¡û
>W1910821953
MWIO01000035
Gammaproteobacteria
Rhodanobacter lindaniclasticus DSM 17932 [MWIO]
61281
61355
+
Val
CAC
[ENA]
¡û
>W1910896598
NFZS01000004
Gammaproteobacteria
Dyella jiangningensis FCAV SCS01 [NFZS]
289321
289395
+
Val
CAC
[ENA]
¡û
>W1911199793
NRDP01000011
Gammaproteobacteria
Dyella sp. AD56 [NRDP]
5793
5867
+
Val
CAC
[ENA]
¡û
>W1810071379
PEER01000011
Gammaproteobacteria
Rhodanobacter sp. TND4EH1 [PEER]
132671
132745
+
Val
CAC
[ENA]
¡û
>W1810485606
QAVX01000035
Gammaproteobacteria
Dyella sp. C11 [QAVX]
10930
11004
+
Val
CAC
[ENA]
¡û
>W1810514373
QBUW01000007
Gammaproteobacteria
Rhodanobacter thiooxydans CR1 [QBUW]
261373
261447
+
Val
CAC
[ENA]
¡û
>W1810591918
QFWQ01000003
Gammaproteobacteria
Rhodanobacter denitrificans Yn1 [QFWQ]
446080
446154
+
Val
CAC
[ENA]
¡û
>W1810628321
QICJ01000001
Gammaproteobacteria
Dyella sp. AtDHG13 [QICJ]
670783
670857
+
Val
CAC
[ENA]
¡û
>W1810629426
QIRF01000006
Gammaproteobacteria
Dyella sp. C9 [QIRF]
145666
145740
+
Val
CAC
[ENA]
¡û
>W1810783239
QQSY01000001
Gammaproteobacteria
Dyella solisilvae DHG54 [QQSY]
582974
583048
+
Val
CAC
[ENA]
¡û
>C151023757
CP007444
Gammaproteobacteria
Dyella jiangningensis SBZ3-12 [CP007444]
983755
983681
-
Val
CAC
[Ensembl]
¡û
>C151039114
CP008884
Gammaproteobacteria
Dyella japonica A8 [CP008884]
2424024
2423950
-
Val
CAC
[Ensembl]
¡û
>ENV09004060
ADIG01001850
Groundwater metagenome 4000601.lucy.pga.C1
1381
1455
+
Val
CAC
[ENA]
¡û
>W1511305071
JPLA01000035
Gammaproteobacteria
Dyella japonica DSM 16301 [JPLA]
22337
22411
+
Val
CAC
[ENA]
¡û
>W11180875
AGIL01000003
Gammaproteobacteria
Rhodanobacter denitrificans 2APBS1 [AGIL]
187419
187345
-
Val
CAC
[ENA]
¡û
>W121071238
AJXT01000004
Gammaproteobacteria
Rhodanobacter spathiphylli B39 [AJXT]
272958
272884
-
Val
CAC
[ENA]
¡û
>W121071355
AJXV01000050
Gammaproteobacteria
Rhodanobacter denitrificans 116-2 [AJXV]
1761
1687
-
Val
CAC
[ENA]
¡û
>W121071384
AJXW01000027
Gammaproteobacteria
Rhodanobacter thiooxydans LCS2 [AJXW]
32477
32403
-
Val
CAC
[ENA]
¡û
>W121113871
ALOY01000067
Gammaproteobacteria
Dyella japonica A8 [ALOY]
5640
5566
-
Val
CAC
[ENA]
¡û
>C131003740
CP003470
Gammaproteobacteria
Rhodanobacter denitrificans 2APBS1 [CP003470]
1380883
1380809
-
Val
CAC
-
¡û
>W1610727320
LMGH01000011
Gammaproteobacteria
Rhodanobacter sp. Root561 [LMGH]
126088
126014
-
Val
CAC
[ENA]
¡û
>W1610729069
LMHR01000088
Gammaproteobacteria
Rhodanobacter sp. Root179 [LMHR]
25543
25469
-
Val
CAC
[ENA]
¡û
>W1610958350
LVJP01003711
Gammaproteobacteria
Rhodanobacter denitrificans [LVJP]
8475
8401
-
Val
CAC
[ENA]
¡û
>W1610958417
LVJQ01002916
Gammaproteobacteria
Rhodanobacter sp. FW104-R5 [LVJQ]
22220
22146
-
Val
CAC
[ENA]
¡û
>W1610958467
LVJR01000109
Gammaproteobacteria
Rhodanobacter sp. FW104-R8 [LVJR]
191
117
-
Val
CAC
[ENA]
¡û
>W1610958480
LVJS01000034
Gammaproteobacteria
Rhodanobacter thiooxydans [LVJS]
50366
50292
-
Val
CAC
[ENA]
¡û
>W1610958523
LVJT01000009
Gammaproteobacteria
Rhodanobacter sp. FW510-T8 [LVJT]
114583
114657
+
Val
CAC
[ENA]
¡û
>W1610958586
LVJU01000073
Gammaproteobacteria
Rhodanobacter sp. FW510-R10 [LVJU]
11603
11677
+
Val
CAC
[ENA]
¡û
>W1610958647
LVJV01001536
Gammaproteobacteria
Rhodanobacter sp. FW510-R12 [LVJV]
4511
4585
+
Val
CAC
[ENA]
¡û
>W1610958661
LVJV01001811
Gammaproteobacteria
Rhodanobacter sp. FW510-R12 [LVJV]
2610
2684
+
Val
CAC
[ENA]
¡û
>W1710519795
FNFA01000003
Gammaproteobacteria
Dyella jiangningensis [FNFA]
4043
3969
-
Val
CAC
[ENA]
¡û
>W1710541175
FNYC01000009
Gammaproteobacteria
Frateuria terrea [FNYC]
93786
93860
+
Val
CAC
[ENA]
¡û
>W1710573395
FOXL01000005
Gammaproteobacteria
Frateuria terrea [FOXL]
93771
93845
+
Val
CAC
[ENA]
¡û
Identical group No.685339 (2 seq.)
>W1911802756
QYUN01000002
Betaproteobacteria
Noviherbaspirillum cavernae K2R10-39 [QYUN]
2428991
2428917
-
Val
CAC
[ENA]
¡û
>ENV09004063
ADIG01003159
Groundwater metagenome 4000601.lucy.pga.C1
473
399
-
Val
CAC
[ENA]
¡û
Identical group No.728023 (1 seq.)
>ENV09004012
ADIG01001041
Groundwater metagenome 4000601.lucy.pga.C1
88853
88779
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK