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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Groundwater metagenome 4000601.lucy.pga.C1
Anticodon = CAG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.123417 (20 seq.)
>W1710863185
LMEX01000001
Gammaproteobacteria
Rhodanobacter sp. Root480 [LMEX]
1347982
1348068
+
Leu
CAG
[ENA]
¡û
>W1710865672
LMGW01000001
Gammaproteobacteria
Rhodanobacter sp. Root627 [LMGW]
1427495
1427581
+
Leu
CAG
[ENA]
¡û
>W1711503675
MKTU01000075
Gammaproteobacteria
Rhodanobacter sp. 67-28 [MKTU]
13779
13865
+
Leu
CAG
[ENA]
¡û
>WENV183736562
PJUC01013358
[PJUC] soil metagenome; Soil enriched on filter paper
201
287
+
Leu
CAG
[ENA]
¢þ
>W1910821937
MWIO01000029
Gammaproteobacteria
Rhodanobacter lindaniclasticus DSM 17932 [MWIO]
68561
68475
-
Leu
CAG
[ENA]
¡û
>W1810071372
PEER01000009
Gammaproteobacteria
Rhodanobacter sp. TND4EH1 [PEER]
618821
618735
-
Leu
CAG
[ENA]
¡û
>ENV09004037
ADIG01001051
Groundwater metagenome 4000601.lucy.pga.C1
18902
18988
+
Leu
CAG
[ENA]
¡û
>W121071212
AJXS01000383
Gammaproteobacteria
Rhodanobacter sp. 115 [AJXS]
20137
20051
-
Leu
CAG
[ENA]
¡û
>W121071282
AJXU01000042
Gammaproteobacteria
Rhodanobacter fulvus Jip2 [AJXU]
53974
53888
-
Leu
CAG
[ENA]
¡û
>W1610586935
LDJJ01000031
Gammaproteobacteria
Stenotrophomonas terrae [LDJJ]
21986
22072
+
Leu
CAG
[ENA]
¡û
>W1610587123
LDJM01000018
Gammaproteobacteria
Stenotrophomonas ginsengisoli [LDJM]
145183
145097
-
Leu
CAG
[ENA]
¡û
>W1610587124
LDJM01000018
Gammaproteobacteria
Stenotrophomonas ginsengisoli [LDJM]
144958
144872
-
Leu
CAG
[ENA]
¡û
>W1610587125
LDJM01000018
Gammaproteobacteria
Stenotrophomonas ginsengisoli [LDJM]
144733
144647
-
Leu
CAG
[ENA]
¡û
>W1610725531
LMEX01000001
Gammaproteobacteria
Rhodanobacter sp. Root480 [LMEX]
1347982
1348068
+
Leu
CAG
[ENA]
¡û
>W1610728018
LMGW01000001
Gammaproteobacteria
Rhodanobacter sp. Root627 [LMGW]
1427495
1427581
+
Leu
CAG
[ENA]
¡û
>W1710567357
FOSR01000011
Gammaproteobacteria
Rhodanobacter glycinis [FOSR]
83186
83272
+
Leu
CAG
[ENA]
¡û
>W1710706065
LDJJ01000031
Gammaproteobacteria
Stenotrophomonas terrae [LDJJ]
21986
22072
+
Leu
CAG
[ENA]
¡û
>W1710706253
LDJM01000018
Gammaproteobacteria
Stenotrophomonas ginsengisoli [LDJM]
145183
145097
-
Leu
CAG
[ENA]
¡û
>W1710706254
LDJM01000018
Gammaproteobacteria
Stenotrophomonas ginsengisoli [LDJM]
144958
144872
-
Leu
CAG
[ENA]
¡û
>W1710706255
LDJM01000018
Gammaproteobacteria
Stenotrophomonas ginsengisoli [LDJM]
144733
144647
-
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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