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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Groundwater metagenome 4000601.lucy.pga.C1
Anticodon = CCA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.454580 (35 seq.)
>W1710863187
LMEX01000001
Gammaproteobacteria
Rhodanobacter sp. Root480 [LMEX]
1514282
1514207
-
Trp
CCA
[ENA]
¡û
>W1710864950
LMGH01000004
Gammaproteobacteria
Rhodanobacter sp. Root561 [LMGH]
16241
16166
-
Trp
CCA
[ENA]
¡û
>W1710865704
LMGW01000005
Gammaproteobacteria
Rhodanobacter sp. Root627 [LMGW]
258
333
+
Trp
CCA
[ENA]
¡û
>W1710866682
LMHR01000026
Gammaproteobacteria
Rhodanobacter sp. Root179 [LMHR]
170
245
+
Trp
CCA
[ENA]
¡û
>W1710880558
LMSK01000001
Gammaproteobacteria
Rhodanobacter sp. Soil772 [LMSK]
1422629
1422554
-
Trp
CCA
[ENA]
¡û
>W1711147553
LVJS01000128
Gammaproteobacteria
Rhodanobacter thiooxydans [LVJS]
185
260
+
Trp
CCA
[ENA]
¡û
>W1711147661
LVJV01000628
Gammaproteobacteria
Rhodanobacter sp. FW510-R12 [LVJV]
227
302
+
Trp
CCA
[ENA]
¡û
>W1711386250
MEFB01000066
Gammaproteobacteria
Rhodanobacter sp. SCN 67-45 [MEFB]
249
324
+
Trp
CCA
[ENA]
¡û
>W1711421699
MHZQ01000251
Gammaproteobacteria
Rhodanobacter sp. RIFOXYA1_FULL_67_6 [MHZQ]
8513
8438
-
Trp
CCA
[ENA]
¡û
>W1711503638
MKTU01000014
Gammaproteobacteria
Rhodanobacter sp. 67-28 [MKTU]
176
251
+
Trp
CCA
[ENA]
¡û
>W1711506755
MKWR01000010
Gammaproteobacteria
Xanthomonadales bacterium 63-13 [MKWR]
1280
1355
+
Trp
CCA
[ENA]
¡û
>W1711751307
MUNQ01000012
Gammaproteobacteria
Rhodanobacter sp. C05 [MUNQ]
242422
242347
-
Trp
CCA
[ENA]
¡û
>W1711751371
MUNR01000014
Gammaproteobacteria
Rhodanobacter sp. C01 [MUNR]
413852
413927
+
Trp
CCA
[ENA]
¡û
>W1711751424
MUNT01000001
Gammaproteobacteria
Rhodanobacter sp. C03 [MUNT]
999378
999453
+
Trp
CCA
[ENA]
¡û
>W1711751508
MUNU01000019
Gammaproteobacteria
Rhodanobacter sp. B05 [MUNU]
563304
563229
-
Trp
CCA
[ENA]
¡û
>W1711751551
MUNV01000026
Gammaproteobacteria
Rhodanobacter sp. B04 [MUNV]
103390
103465
+
Trp
CCA
[ENA]
¡û
>W131218976
ATYD01000231
Gammaproteobacteria
Rhodanobacter sp. OR444 [ATYD]
16701
16626
-
Trp
CCA
[ENA]
¡û
>WENV180099687
NMRC01022710
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
169
244
+
Trp
CCA
[ENA]
¢þ
>WENV170707009
LNAP01010818
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
15925
15850
-
Trp
CCA
[ENA]
¢þ
>C191145562
CP035704
Gammaproteobacteria
Pseudolysobacter antarcticus AQ6-296 [CP035704]
3524374
3524299
-
Trp
CCA
-
¡û
>W1910821929
MWIO01000021
Gammaproteobacteria
Rhodanobacter lindaniclasticus DSM 17932 [MWIO]
210
285
+
Trp
CCA
[ENA]
¡û
>W1910841630
NADW01000029
Bacillota
Bacillus sp. SRB_336 [NADW]
16291
16216
-
Trp
CCA
[ENA]
¡û
>W1810071386
PEER01000012
Gammaproteobacteria
Rhodanobacter sp. TND4EH1 [PEER]
239023
239098
+
Trp
CCA
[ENA]
¡û
>W1810514405
QBUW01000021
Gammaproteobacteria
Rhodanobacter thiooxydans CR1 [QBUW]
16160
16085
-
Trp
CCA
[ENA]
¡û
>ENV09004006
ADIG01000047
Groundwater metagenome 4000601.lucy.pga.C1
373
448
+
Trp
CCA
[ENA]
¡û
>W121071268
AJXT01000051
Gammaproteobacteria
Rhodanobacter spathiphylli B39 [AJXT]
16161
16086
-
Trp
CCA
[ENA]
¡û
>W121071316
AJXU01000086
Gammaproteobacteria
Rhodanobacter fulvus Jip2 [AJXU]
122
197
+
Trp
CCA
[ENA]
¡û
>W1610725533
LMEX01000001
Gammaproteobacteria
Rhodanobacter sp. Root480 [LMEX]
1514282
1514207
-
Trp
CCA
[ENA]
¡û
>W1610727296
LMGH01000004
Gammaproteobacteria
Rhodanobacter sp. Root561 [LMGH]
16241
16166
-
Trp
CCA
[ENA]
¡û
>W1610728050
LMGW01000005
Gammaproteobacteria
Rhodanobacter sp. Root627 [LMGW]
258
333
+
Trp
CCA
[ENA]
¡û
>W1610729028
LMHR01000026
Gammaproteobacteria
Rhodanobacter sp. Root179 [LMHR]
170
245
+
Trp
CCA
[ENA]
¡û
>W1610742904
LMSK01000001
Gammaproteobacteria
Rhodanobacter sp. Soil772 [LMSK]
1422629
1422554
-
Trp
CCA
[ENA]
¡û
>W1610958506
LVJS01000128
Gammaproteobacteria
Rhodanobacter thiooxydans [LVJS]
185
260
+
Trp
CCA
[ENA]
¡û
>W1610958614
LVJV01000628
Gammaproteobacteria
Rhodanobacter sp. FW510-R12 [LVJV]
227
302
+
Trp
CCA
[ENA]
¡û
>W1710592208
FRCH01000001
Gammaproteobacteria
Rhodanobacter sp. OK091 [FRCH]
641382
641307
-
Trp
CCA
[ENA]
¡û
Identical group No.457585 (86 seq.)
>W1710890920
LNCE01000060
Betaproteobacteria
Janthinobacterium sp. Ant5-2-1 [LNCE]
8775
8700
-
Trp
CCA
[ENA]
¡û
>W1710924044
LOCQ01000061
Betaproteobacteria
Janthinobacterium psychrotolerans S3-2 [LOCQ]
310039
309964
-
Trp
CCA
[ENA]
¡û
>W1711033343
LRHV01000010
Betaproteobacteria
Duganella sp. HH105 [LRHV]
76504
76579
+
Trp
CCA
[ENA]
¡û
>W1711033431
LRHW01000091
Betaproteobacteria
Janthinobacterium lividum [LRHW]
61938
61863
-
Trp
CCA
[ENA]
¡û
>W1711033445
LRHX01000005
Betaproteobacteria
Janthinobacterium sp. MP5059B [LRHX]
648
723
+
Trp
CCA
[ENA]
¡û
>W1711033514
LRHY01000037
Betaproteobacteria
Janthinobacterium sp. HH100 [LRHY]
64417
64342
-
Trp
CCA
[ENA]
¡û
>W1711033607
LRHZ01000027
Betaproteobacteria
Janthinobacterium sp. HH102 [LRHZ]
264
339
+
Trp
CCA
[ENA]
¡û
>W1711033662
LRIA01000097
Betaproteobacteria
Janthinobacterium sp. HH103 [LRIA]
192
267
+
Trp
CCA
[ENA]
¡û
>W1711033697
LRIB01000019
Betaproteobacteria
Janthinobacterium sp. HH104 [LRIB]
64240
64165
-
Trp
CCA
[ENA]
¡û
>W1711033786
LRIC01000062
Betaproteobacteria
Janthinobacterium sp. HH106 [LRIC]
64127
64052
-
Trp
CCA
[ENA]
¡û
>W1711033845
LRID01000114
Betaproteobacteria
Janthinobacterium sp. HH107 [LRID]
174
249
+
Trp
CCA
[ENA]
¡û
>W1711046693
LRON01000022
Betaproteobacteria
Duganella sp. HH101 [LRON]
688
763
+
Trp
CCA
[ENA]
¡û
>W1711308599
MAQB02000001
Betaproteobacteria
Janthinobacterium lividum [MAQB]
1540010
1539935
-
Trp
CCA
[ENA]
¡û
>W1712004474
NEGX01000035
Betaproteobacteria
Janthinobacterium sp. GW460W [NEGX]
63985
63910
-
Trp
CCA
[ENA]
¡û
>W1712004532
NEGY01000012
Betaproteobacteria
Janthinobacterium sp. GW460P [NEGY]
63985
63910
-
Trp
CCA
[ENA]
¡û
>W1712004626
NEGZ01000031
Betaproteobacteria
Janthinobacterium sp. GW458P [NEGZ]
64191
64116
-
Trp
CCA
[ENA]
¡û
>W1712004699
NEHA01000038
Betaproteobacteria
Janthinobacterium sp. GW456W [NEHA]
63985
63910
-
Trp
CCA
[ENA]
¡û
>W1712004769
NEHB01000010
Betaproteobacteria
Janthinobacterium sp. GW456P [NEHB]
220103
220028
-
Trp
CCA
[ENA]
¡û
>C171010510
CP011319
Betaproteobacteria
Janthinobacterium sp. 1_2014MBL_MicDiv [CP011319]
5816828
5816753
-
Trp
CCA
-
¡û
>C171094961
CP019510
Betaproteobacteria
Janthinobacterium sp. LM6 [CP019510]
665174
665249
+
Trp
CCA
-
¡û
>W131050081
AMWD01000001
Betaproteobacteria
Janthinobacterium sp. HH01 [AMWD]
695217
695292
+
Trp
CCA
[ENA]
¡û
>W131106727
APFF01000033
Betaproteobacteria
Janthinobacterium sp. CG3 [APFF]
288839
288764
-
Trp
CCA
[ENA]
¡û
>W131179097
ARMC01000024
Betaproteobacteria
Oxalobacteraceae bacterium AB_14 [ARMC]
107685
107760
+
Trp
CCA
[ENA]
¡û
>WENV180025772
FTIQ01038273
[FTIQ] metagenome; soil
448
373
-
Trp
CCA
[ENA]
¢þ
>WENV180035878
FTLB01031933
[FTLB] metagenome; soil
268
343
+
Trp
CCA
[ENA]
¢þ
>WENV181380163
OFRD01036744
[OFRD] wastewater metagenome; Exp Tend CN 100WW
813
738
-
Trp
CCA
[ENA]
¢þ
>WENV170559138
CXWL01111762
[CXWL] groundwater metagenome; biofilm material
273
348
+
Trp
CCA
[ENA]
¢þ
>WENV170559199
CXWL01114076
[CXWL] groundwater metagenome; biofilm material
2060
2135
+
Trp
CCA
[ENA]
¢þ
>WENV170559245
CXWL01115740
[CXWL] groundwater metagenome; biofilm material
1350
1275
-
Trp
CCA
[ENA]
¢þ
>WENV170559428
CXWL01123017
[CXWL] groundwater metagenome; biofilm material
1053
1128
+
Trp
CCA
[ENA]
¢þ
>W141484454
JFYR01000012
Betaproteobacteria
Janthinobacterium lividum [JFYR]
448524
448599
+
Trp
CCA
[ENA]
¡û
>C181081098
CP023422
Betaproteobacteria
Janthinobacterium svalbardensis PAMC 27463 [CP023422]
689968
690043
+
Trp
CCA
-
¡û
>C181102658
CP024608
Betaproteobacteria
Massilia violaceinigra B2 [CP024608]
795795
795870
+
Trp
CCA
-
¡û
>C191098136
CP033019
Betaproteobacteria
Janthinobacterium agaricidamnosum BHSEK [CP033019]
6279489
6279564
+
Trp
CCA
-
¡û
>C191188141
CP041185
Betaproteobacteria
Janthinobacterium tructae SNU WT3 [CP041185]
4548878
4548953
+
Trp
CCA
-
¡û
>W141821513
JQNP01000001
Betaproteobacteria
Janthinobacterium sp. RA13 [JQNP]
4692635
4692710
+
Trp
CCA
[ENA]
¡û
>W1910942537
NJGY01000001
Betaproteobacteria
Janthinobacterium sp. PC23-8 [NJGY]
2902288
2902363
+
Trp
CCA
[ENA]
¡û
>W1911199840
NRDQ01000011
Betaproteobacteria
Janthinobacterium sp. AD80 [NRDQ]
45219
45144
-
Trp
CCA
[ENA]
¡û
>W1911802842
QYUP01000058
Betaproteobacteria
Massilia cavernae K1S02-61 [QYUP]
4422
4497
+
Trp
CCA
[ENA]
¡û
>W1810062368
PDOB01000021
Betaproteobacteria
Massilia psychrophila JCM 30813 [PDOB]
269
344
+
Trp
CCA
[ENA]
¡û
>W1810062455
PDOC01000038
Betaproteobacteria
Massilia eurypsychrophila JCM 30074 [PDOC]
285
360
+
Trp
CCA
[ENA]
¡û
>W1810068213
PDZI01000022
Betaproteobacteria
Janthinobacterium sp. BJB303 [PDZI]
64170
64095
-
Trp
CCA
[ENA]
¡û
>W1810068290
PDZJ01000008
Betaproteobacteria
Janthinobacterium sp. BJB301 [PDZJ]
222
297
+
Trp
CCA
[ENA]
¡û
>W1810068371
PDZK01000010
Betaproteobacteria
Janthinobacterium sp. BJB446 [PDZK]
61929
61854
-
Trp
CCA
[ENA]
¡û
>W1810068443
PDZL01000026
Betaproteobacteria
Janthinobacterium sp. BJB426 [PDZL]
62492
62417
-
Trp
CCA
[ENA]
¡û
>W1810068481
PDZM01000003
Betaproteobacteria
Janthinobacterium sp. BJB312 [PDZM]
273293
273368
+
Trp
CCA
[ENA]
¡û
>W1810068544
PDZN01000001
Betaproteobacteria
Janthinobacterium sp. BJB304 [PDZN]
12848
12773
-
Trp
CCA
[ENA]
¡û
>W1810068675
PDZO02000022
Betaproteobacteria
Janthinobacterium sp. BJB1 [PDZO]
64171
64096
-
Trp
CCA
[ENA]
¡û
>W1810068734
PDZP01000008
Betaproteobacteria
Janthinobacterium sp. BJB412 [PDZP]
15986
16061
+
Trp
CCA
[ENA]
¡û
>W1810069791
PEBS01000088
Betaproteobacteria
Janthinobacterium sp. ROICE36 [PEBS]
20765
20690
-
Trp
CCA
[ENA]
¡û
>W1810071317
PEEQ01000001
Betaproteobacteria
Janthinobacterium sp. 13 [PEEQ]
2715328
2715253
-
Trp
CCA
[ENA]
¡û
>W1810072814
PEFN01000001
Betaproteobacteria
Janthinobacterium sp. 35 [PEFN]
2260056
2259981
-
Trp
CCA
[ENA]
¡û
>W1810089388
PGES01000001
Betaproteobacteria
Janthinobacterium sp. 67 [PGES]
4512282
4512357
+
Trp
CCA
[ENA]
¡û
>W1810121265
PHUG01000001
Betaproteobacteria
Janthinobacterium sp. 64 [PHUG]
4119413
4119488
+
Trp
CCA
[ENA]
¡û
>W1810172809
PJMQ01000001
Betaproteobacteria
Janthinobacterium sp. 61 [PJMQ]
4754989
4755064
+
Trp
CCA
[ENA]
¡û
>W1810387706
PXWF02000044
Betaproteobacteria
Massilia glaciei B448-2 [PXWF]
15779
15704
-
Trp
CCA
[ENA]
¡û
>W1810576759
QENT01000001
Betaproteobacteria
Janthinobacterium sp. 78 [QENT]
705647
705722
+
Trp
CCA
[ENA]
¡û
>W1810908091
QVIL01000002
Betaproteobacteria
Duganella sp. BJB489 [QVIL]
82682
82607
-
Trp
CCA
[ENA]
¡û
>W1810908158
QVIM01000002
Betaproteobacteria
Duganella sp. BJB488 [QVIM]
67882
67807
-
Trp
CCA
[ENA]
¡û
>W1810908242
QVIN01000004
Betaproteobacteria
Duganella sp. BJB480 [QVIN]
646375
646450
+
Trp
CCA
[ENA]
¡û
>W1810908342
QVIO01000012
Betaproteobacteria
Duganella sp. BJB476 [QVIO]
110178
110103
-
Trp
CCA
[ENA]
¡û
>W1810908411
QVIP01000014
Betaproteobacteria
Duganella sp. BJB475 [QVIP]
110178
110103
-
Trp
CCA
[ENA]
¡û
>C151100177
HG322949
Betaproteobacteria
Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 [HG322949]
5381413
5381338
-
Trp
CCA
[Ensembl]
¡û
>ENV09004053
ADIG01001159
Groundwater metagenome 4000601.lucy.pga.C1
174
249
+
Trp
CCA
[ENA]
¡û
>W1511355694
JRRH01000023
Betaproteobacteria
Janthinobacterium lividum MTR [JRRH]
201
276
+
Trp
CCA
[ENA]
¡û
>W1511588741
LBCO01000005
Betaproteobacteria
Janthinobacterium sp. KBS0711 [LBCO]
191
266
+
Trp
CCA
[ENA]
¡û
>W121031796
AHHB01000015
Betaproteobacteria
Janthinobacterium lividum PAMC 25724 [AHHB]
1516
1591
+
Trp
CCA
[ENA]
¡û
>W1610070511
BCTH01000119
Betaproteobacteria
Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 [BCTH]
22069
21994
-
Trp
CCA
[ENA]
¡û
>W1610093115
CYSS01000003
Betaproteobacteria
Janthinobacterium sp. CG23_2 [CYSS]
1184606
1184681
+
Trp
CCA
[ENA]
¡û
>W1610163409
FAOS01000003
Betaproteobacteria
Janthinobacterium sp. CG23_2 [FAOS]
1184606
1184681
+
Trp
CCA
[ENA]
¡û
>W1610751316
LNCE01000060
Betaproteobacteria
Janthinobacterium sp. Ant5-2-1 [LNCE]
8775
8700
-
Trp
CCA
[ENA]
¡û
>W1610781690
LOCQ01000061
Betaproteobacteria
Janthinobacterium psychrotolerans S3-2 [LOCQ]
310039
309964
-
Trp
CCA
[ENA]
¡û
>W1611056266
MAQB01000056
Betaproteobacteria
Janthinobacterium lividum [MAQB]
236447
236372
-
Trp
CCA
[ENA]
¡û
>W1710067884
BCTH01000119
Betaproteobacteria
Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 [BCTH]
22069
21994
-
Trp
CCA
[ENA]
¡û
>W1710096323
CYSS01000003
Betaproteobacteria
Janthinobacterium sp. CG23_2 [CYSS]
1184606
1184681
+
Trp
CCA
[ENA]
¡û
>W1710165076
FAOS01000003
Betaproteobacteria
Janthinobacterium sp. CG23_2 [FAOS]
1184606
1184681
+
Trp
CCA
[ENA]
¡û
>W1710509383
FMXD01000016
Betaproteobacteria
Janthinobacterium sp. 551a [FMXD]
433
508
+
Trp
CCA
[ENA]
¡û
>W1710517047
FNDA01000003
Betaproteobacteria
Janthinobacterium sp. YR213 [FNDA]
362568
362493
-
Trp
CCA
[ENA]
¡û
>W1710522238
FNHA01000019
Betaproteobacteria
Janthinobacterium sp. OK676 [FNHA]
63026
62951
-
Trp
CCA
[ENA]
¡û
>W1710547612
FODC01000008
Betaproteobacteria
Duganella sp. CF517 [FODC]
119984
120059
+
Trp
CCA
[ENA]
¡û
>W1710556784
FOKL01000017
Betaproteobacteria
Janthinobacterium sp. 344 [FOKL]
61029
60954
-
Trp
CCA
[ENA]
¡û
>W1710568835
FOTW01000036
Betaproteobacteria
Rugamonas rubra [FOTW]
1130
1205
+
Trp
CCA
[ENA]
¡û
>W1710581742
FPKH01000014
Betaproteobacteria
Janthinobacterium lividum [FPKH]
783
858
+
Trp
CCA
[ENA]
¡û
>W1710586024
FQWU01000007
Betaproteobacteria
Massilia sp. CF038 [FQWU]
101469
101394
-
Trp
CCA
[ENA]
¡û
>W1710596835
FTMV01000001
Betaproteobacteria
Janthinobacterium sp. TND4EL3 [FTMV]
434800
434875
+
Trp
CCA
[ENA]
¡û
>W1710720675
LFKP01000014
Betaproteobacteria
Janthinobacterium lividum [LFKP]
333866
333791
-
Trp
CCA
[ENA]
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Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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