tRNA genes clustered and arranged according to each identical group

Groundwater metagenome 4000601.lucy.pga.C1

Anticodon = CCA

HIT: 2 Group(s).
Download Sequence Representative sequence of each cluster
View ClustalW result
Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.454580 (35 seq.)
>W1710863187 LMEX01000001 Gammaproteobacteria Rhodanobacter sp. Root480 [LMEX] 1514282 1514207 - Trp CCA [ENA] ¡û
>W1710864950 LMGH01000004 Gammaproteobacteria Rhodanobacter sp. Root561 [LMGH] 16241 16166 - Trp CCA [ENA] ¡û
>W1710865704 LMGW01000005 Gammaproteobacteria Rhodanobacter sp. Root627 [LMGW] 258 333 + Trp CCA [ENA] ¡û
>W1710866682 LMHR01000026 Gammaproteobacteria Rhodanobacter sp. Root179 [LMHR] 170 245 + Trp CCA [ENA] ¡û
>W1710880558 LMSK01000001 Gammaproteobacteria Rhodanobacter sp. Soil772 [LMSK] 1422629 1422554 - Trp CCA [ENA] ¡û
>W1711147553 LVJS01000128 Gammaproteobacteria Rhodanobacter thiooxydans [LVJS] 185 260 + Trp CCA [ENA] ¡û
>W1711147661 LVJV01000628 Gammaproteobacteria Rhodanobacter sp. FW510-R12 [LVJV] 227 302 + Trp CCA [ENA] ¡û
>W1711386250 MEFB01000066 Gammaproteobacteria Rhodanobacter sp. SCN 67-45 [MEFB] 249 324 + Trp CCA [ENA] ¡û
>W1711421699 MHZQ01000251 Gammaproteobacteria Rhodanobacter sp. RIFOXYA1_FULL_67_6 [MHZQ] 8513 8438 - Trp CCA [ENA] ¡û
>W1711503638 MKTU01000014 Gammaproteobacteria Rhodanobacter sp. 67-28 [MKTU] 176 251 + Trp CCA [ENA] ¡û
>W1711506755 MKWR01000010 Gammaproteobacteria Xanthomonadales bacterium 63-13 [MKWR] 1280 1355 + Trp CCA [ENA] ¡û
>W1711751307 MUNQ01000012 Gammaproteobacteria Rhodanobacter sp. C05 [MUNQ] 242422 242347 - Trp CCA [ENA] ¡û
>W1711751371 MUNR01000014 Gammaproteobacteria Rhodanobacter sp. C01 [MUNR] 413852 413927 + Trp CCA [ENA] ¡û
>W1711751424 MUNT01000001 Gammaproteobacteria Rhodanobacter sp. C03 [MUNT] 999378 999453 + Trp CCA [ENA] ¡û
>W1711751508 MUNU01000019 Gammaproteobacteria Rhodanobacter sp. B05 [MUNU] 563304 563229 - Trp CCA [ENA] ¡û
>W1711751551 MUNV01000026 Gammaproteobacteria Rhodanobacter sp. B04 [MUNV] 103390 103465 + Trp CCA [ENA] ¡û
>W131218976 ATYD01000231 Gammaproteobacteria Rhodanobacter sp. OR444 [ATYD] 16701 16626 - Trp CCA [ENA] ¡û
>WENV180099687 NMRC01022710 [NMRC] plant metagenome; fluid collected inside the plant's pitcher 169 244 + Trp CCA [ENA] ¢þ
>WENV170707009 LNAP01010818 [LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with 15925 15850 - Trp CCA [ENA] ¢þ
>C191145562 CP035704 Gammaproteobacteria Pseudolysobacter antarcticus AQ6-296 [CP035704] 3524374 3524299 - Trp CCA - ¡û
>W1910821929 MWIO01000021 Gammaproteobacteria Rhodanobacter lindaniclasticus DSM 17932 [MWIO] 210 285 + Trp CCA [ENA] ¡û
>W1910841630 NADW01000029 Bacillota Bacillus sp. SRB_336 [NADW] 16291 16216 - Trp CCA [ENA] ¡û
>W1810071386 PEER01000012 Gammaproteobacteria Rhodanobacter sp. TND4EH1 [PEER] 239023 239098 + Trp CCA [ENA] ¡û
>W1810514405 QBUW01000021 Gammaproteobacteria Rhodanobacter thiooxydans CR1 [QBUW] 16160 16085 - Trp CCA [ENA] ¡û
>ENV09004006 ADIG01000047 Groundwater metagenome 4000601.lucy.pga.C1 373 448 + Trp CCA [ENA] ¡û
>W121071268 AJXT01000051 Gammaproteobacteria Rhodanobacter spathiphylli B39 [AJXT] 16161 16086 - Trp CCA [ENA] ¡û
>W121071316 AJXU01000086 Gammaproteobacteria Rhodanobacter fulvus Jip2 [AJXU] 122 197 + Trp CCA [ENA] ¡û
>W1610725533 LMEX01000001 Gammaproteobacteria Rhodanobacter sp. Root480 [LMEX] 1514282 1514207 - Trp CCA [ENA] ¡û
>W1610727296 LMGH01000004 Gammaproteobacteria Rhodanobacter sp. Root561 [LMGH] 16241 16166 - Trp CCA [ENA] ¡û
>W1610728050 LMGW01000005 Gammaproteobacteria Rhodanobacter sp. Root627 [LMGW] 258 333 + Trp CCA [ENA] ¡û
>W1610729028 LMHR01000026 Gammaproteobacteria Rhodanobacter sp. Root179 [LMHR] 170 245 + Trp CCA [ENA] ¡û
>W1610742904 LMSK01000001 Gammaproteobacteria Rhodanobacter sp. Soil772 [LMSK] 1422629 1422554 - Trp CCA [ENA] ¡û
>W1610958506 LVJS01000128 Gammaproteobacteria Rhodanobacter thiooxydans [LVJS] 185 260 + Trp CCA [ENA] ¡û
>W1610958614 LVJV01000628 Gammaproteobacteria Rhodanobacter sp. FW510-R12 [LVJV] 227 302 + Trp CCA [ENA] ¡û
>W1710592208 FRCH01000001 Gammaproteobacteria Rhodanobacter sp. OK091 [FRCH] 641382 641307 - Trp CCA [ENA] ¡û
Identical group No.457585 (86 seq.)
>W1710890920 LNCE01000060 Betaproteobacteria Janthinobacterium sp. Ant5-2-1 [LNCE] 8775 8700 - Trp CCA [ENA] ¡û
>W1710924044 LOCQ01000061 Betaproteobacteria Janthinobacterium psychrotolerans S3-2 [LOCQ] 310039 309964 - Trp CCA [ENA] ¡û
>W1711033343 LRHV01000010 Betaproteobacteria Duganella sp. HH105 [LRHV] 76504 76579 + Trp CCA [ENA] ¡û
>W1711033431 LRHW01000091 Betaproteobacteria Janthinobacterium lividum [LRHW] 61938 61863 - Trp CCA [ENA] ¡û
>W1711033445 LRHX01000005 Betaproteobacteria Janthinobacterium sp. MP5059B [LRHX] 648 723 + Trp CCA [ENA] ¡û
>W1711033514 LRHY01000037 Betaproteobacteria Janthinobacterium sp. HH100 [LRHY] 64417 64342 - Trp CCA [ENA] ¡û
>W1711033607 LRHZ01000027 Betaproteobacteria Janthinobacterium sp. HH102 [LRHZ] 264 339 + Trp CCA [ENA] ¡û
>W1711033662 LRIA01000097 Betaproteobacteria Janthinobacterium sp. HH103 [LRIA] 192 267 + Trp CCA [ENA] ¡û
>W1711033697 LRIB01000019 Betaproteobacteria Janthinobacterium sp. HH104 [LRIB] 64240 64165 - Trp CCA [ENA] ¡û
>W1711033786 LRIC01000062 Betaproteobacteria Janthinobacterium sp. HH106 [LRIC] 64127 64052 - Trp CCA [ENA] ¡û
>W1711033845 LRID01000114 Betaproteobacteria Janthinobacterium sp. HH107 [LRID] 174 249 + Trp CCA [ENA] ¡û
>W1711046693 LRON01000022 Betaproteobacteria Duganella sp. HH101 [LRON] 688 763 + Trp CCA [ENA] ¡û
>W1711308599 MAQB02000001 Betaproteobacteria Janthinobacterium lividum [MAQB] 1540010 1539935 - Trp CCA [ENA] ¡û
>W1712004474 NEGX01000035 Betaproteobacteria Janthinobacterium sp. GW460W [NEGX] 63985 63910 - Trp CCA [ENA] ¡û
>W1712004532 NEGY01000012 Betaproteobacteria Janthinobacterium sp. GW460P [NEGY] 63985 63910 - Trp CCA [ENA] ¡û
>W1712004626 NEGZ01000031 Betaproteobacteria Janthinobacterium sp. GW458P [NEGZ] 64191 64116 - Trp CCA [ENA] ¡û
>W1712004699 NEHA01000038 Betaproteobacteria Janthinobacterium sp. GW456W [NEHA] 63985 63910 - Trp CCA [ENA] ¡û
>W1712004769 NEHB01000010 Betaproteobacteria Janthinobacterium sp. GW456P [NEHB] 220103 220028 - Trp CCA [ENA] ¡û
>C171010510 CP011319 Betaproteobacteria Janthinobacterium sp. 1_2014MBL_MicDiv [CP011319] 5816828 5816753 - Trp CCA - ¡û
>C171094961 CP019510 Betaproteobacteria Janthinobacterium sp. LM6 [CP019510] 665174 665249 + Trp CCA - ¡û
>W131050081 AMWD01000001 Betaproteobacteria Janthinobacterium sp. HH01 [AMWD] 695217 695292 + Trp CCA [ENA] ¡û
>W131106727 APFF01000033 Betaproteobacteria Janthinobacterium sp. CG3 [APFF] 288839 288764 - Trp CCA [ENA] ¡û
>W131179097 ARMC01000024 Betaproteobacteria Oxalobacteraceae bacterium AB_14 [ARMC] 107685 107760 + Trp CCA [ENA] ¡û
>WENV180025772 FTIQ01038273 [FTIQ] metagenome; soil 448 373 - Trp CCA [ENA] ¢þ
>WENV180035878 FTLB01031933 [FTLB] metagenome; soil 268 343 + Trp CCA [ENA] ¢þ
>WENV181380163 OFRD01036744 [OFRD] wastewater metagenome; Exp Tend CN 100WW 813 738 - Trp CCA [ENA] ¢þ
>WENV170559138 CXWL01111762 [CXWL] groundwater metagenome; biofilm material 273 348 + Trp CCA [ENA] ¢þ
>WENV170559199 CXWL01114076 [CXWL] groundwater metagenome; biofilm material 2060 2135 + Trp CCA [ENA] ¢þ
>WENV170559245 CXWL01115740 [CXWL] groundwater metagenome; biofilm material 1350 1275 - Trp CCA [ENA] ¢þ
>WENV170559428 CXWL01123017 [CXWL] groundwater metagenome; biofilm material 1053 1128 + Trp CCA [ENA] ¢þ
>W141484454 JFYR01000012 Betaproteobacteria Janthinobacterium lividum [JFYR] 448524 448599 + Trp CCA [ENA] ¡û
>C181081098 CP023422 Betaproteobacteria Janthinobacterium svalbardensis PAMC 27463 [CP023422] 689968 690043 + Trp CCA - ¡û
>C181102658 CP024608 Betaproteobacteria Massilia violaceinigra B2 [CP024608] 795795 795870 + Trp CCA - ¡û
>C191098136 CP033019 Betaproteobacteria Janthinobacterium agaricidamnosum BHSEK [CP033019] 6279489 6279564 + Trp CCA - ¡û
>C191188141 CP041185 Betaproteobacteria Janthinobacterium tructae SNU WT3 [CP041185] 4548878 4548953 + Trp CCA - ¡û
>W141821513 JQNP01000001 Betaproteobacteria Janthinobacterium sp. RA13 [JQNP] 4692635 4692710 + Trp CCA [ENA] ¡û
>W1910942537 NJGY01000001 Betaproteobacteria Janthinobacterium sp. PC23-8 [NJGY] 2902288 2902363 + Trp CCA [ENA] ¡û
>W1911199840 NRDQ01000011 Betaproteobacteria Janthinobacterium sp. AD80 [NRDQ] 45219 45144 - Trp CCA [ENA] ¡û
>W1911802842 QYUP01000058 Betaproteobacteria Massilia cavernae K1S02-61 [QYUP] 4422 4497 + Trp CCA [ENA] ¡û
>W1810062368 PDOB01000021 Betaproteobacteria Massilia psychrophila JCM 30813 [PDOB] 269 344 + Trp CCA [ENA] ¡û
>W1810062455 PDOC01000038 Betaproteobacteria Massilia eurypsychrophila JCM 30074 [PDOC] 285 360 + Trp CCA [ENA] ¡û
>W1810068213 PDZI01000022 Betaproteobacteria Janthinobacterium sp. BJB303 [PDZI] 64170 64095 - Trp CCA [ENA] ¡û
>W1810068290 PDZJ01000008 Betaproteobacteria Janthinobacterium sp. BJB301 [PDZJ] 222 297 + Trp CCA [ENA] ¡û
>W1810068371 PDZK01000010 Betaproteobacteria Janthinobacterium sp. BJB446 [PDZK] 61929 61854 - Trp CCA [ENA] ¡û
>W1810068443 PDZL01000026 Betaproteobacteria Janthinobacterium sp. BJB426 [PDZL] 62492 62417 - Trp CCA [ENA] ¡û
>W1810068481 PDZM01000003 Betaproteobacteria Janthinobacterium sp. BJB312 [PDZM] 273293 273368 + Trp CCA [ENA] ¡û
>W1810068544 PDZN01000001 Betaproteobacteria Janthinobacterium sp. BJB304 [PDZN] 12848 12773 - Trp CCA [ENA] ¡û
>W1810068675 PDZO02000022 Betaproteobacteria Janthinobacterium sp. BJB1 [PDZO] 64171 64096 - Trp CCA [ENA] ¡û
>W1810068734 PDZP01000008 Betaproteobacteria Janthinobacterium sp. BJB412 [PDZP] 15986 16061 + Trp CCA [ENA] ¡û
>W1810069791 PEBS01000088 Betaproteobacteria Janthinobacterium sp. ROICE36 [PEBS] 20765 20690 - Trp CCA [ENA] ¡û
>W1810071317 PEEQ01000001 Betaproteobacteria Janthinobacterium sp. 13 [PEEQ] 2715328 2715253 - Trp CCA [ENA] ¡û
>W1810072814 PEFN01000001 Betaproteobacteria Janthinobacterium sp. 35 [PEFN] 2260056 2259981 - Trp CCA [ENA] ¡û
>W1810089388 PGES01000001 Betaproteobacteria Janthinobacterium sp. 67 [PGES] 4512282 4512357 + Trp CCA [ENA] ¡û
>W1810121265 PHUG01000001 Betaproteobacteria Janthinobacterium sp. 64 [PHUG] 4119413 4119488 + Trp CCA [ENA] ¡û
>W1810172809 PJMQ01000001 Betaproteobacteria Janthinobacterium sp. 61 [PJMQ] 4754989 4755064 + Trp CCA [ENA] ¡û
>W1810387706 PXWF02000044 Betaproteobacteria Massilia glaciei B448-2 [PXWF] 15779 15704 - Trp CCA [ENA] ¡û
>W1810576759 QENT01000001 Betaproteobacteria Janthinobacterium sp. 78 [QENT] 705647 705722 + Trp CCA [ENA] ¡û
>W1810908091 QVIL01000002 Betaproteobacteria Duganella sp. BJB489 [QVIL] 82682 82607 - Trp CCA [ENA] ¡û
>W1810908158 QVIM01000002 Betaproteobacteria Duganella sp. BJB488 [QVIM] 67882 67807 - Trp CCA [ENA] ¡û
>W1810908242 QVIN01000004 Betaproteobacteria Duganella sp. BJB480 [QVIN] 646375 646450 + Trp CCA [ENA] ¡û
>W1810908342 QVIO01000012 Betaproteobacteria Duganella sp. BJB476 [QVIO] 110178 110103 - Trp CCA [ENA] ¡û
>W1810908411 QVIP01000014 Betaproteobacteria Duganella sp. BJB475 [QVIP] 110178 110103 - Trp CCA [ENA] ¡û
>C151100177 HG322949 Betaproteobacteria Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 [HG322949] 5381413 5381338 - Trp CCA [Ensembl] ¡û
>ENV09004053 ADIG01001159 Groundwater metagenome 4000601.lucy.pga.C1 174 249 + Trp CCA [ENA] ¡û
>W1511355694 JRRH01000023 Betaproteobacteria Janthinobacterium lividum MTR [JRRH] 201 276 + Trp CCA [ENA] ¡û
>W1511588741 LBCO01000005 Betaproteobacteria Janthinobacterium sp. KBS0711 [LBCO] 191 266 + Trp CCA [ENA] ¡û
>W121031796 AHHB01000015 Betaproteobacteria Janthinobacterium lividum PAMC 25724 [AHHB] 1516 1591 + Trp CCA [ENA] ¡û
>W1610070511 BCTH01000119 Betaproteobacteria Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 [BCTH] 22069 21994 - Trp CCA [ENA] ¡û
>W1610093115 CYSS01000003 Betaproteobacteria Janthinobacterium sp. CG23_2 [CYSS] 1184606 1184681 + Trp CCA [ENA] ¡û
>W1610163409 FAOS01000003 Betaproteobacteria Janthinobacterium sp. CG23_2 [FAOS] 1184606 1184681 + Trp CCA [ENA] ¡û
>W1610751316 LNCE01000060 Betaproteobacteria Janthinobacterium sp. Ant5-2-1 [LNCE] 8775 8700 - Trp CCA [ENA] ¡û
>W1610781690 LOCQ01000061 Betaproteobacteria Janthinobacterium psychrotolerans S3-2 [LOCQ] 310039 309964 - Trp CCA [ENA] ¡û
>W1611056266 MAQB01000056 Betaproteobacteria Janthinobacterium lividum [MAQB] 236447 236372 - Trp CCA [ENA] ¡û
>W1710067884 BCTH01000119 Betaproteobacteria Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 [BCTH] 22069 21994 - Trp CCA [ENA] ¡û
>W1710096323 CYSS01000003 Betaproteobacteria Janthinobacterium sp. CG23_2 [CYSS] 1184606 1184681 + Trp CCA [ENA] ¡û
>W1710165076 FAOS01000003 Betaproteobacteria Janthinobacterium sp. CG23_2 [FAOS] 1184606 1184681 + Trp CCA [ENA] ¡û
>W1710509383 FMXD01000016 Betaproteobacteria Janthinobacterium sp. 551a [FMXD] 433 508 + Trp CCA [ENA] ¡û
>W1710517047 FNDA01000003 Betaproteobacteria Janthinobacterium sp. YR213 [FNDA] 362568 362493 - Trp CCA [ENA] ¡û
>W1710522238 FNHA01000019 Betaproteobacteria Janthinobacterium sp. OK676 [FNHA] 63026 62951 - Trp CCA [ENA] ¡û
>W1710547612 FODC01000008 Betaproteobacteria Duganella sp. CF517 [FODC] 119984 120059 + Trp CCA [ENA] ¡û
>W1710556784 FOKL01000017 Betaproteobacteria Janthinobacterium sp. 344 [FOKL] 61029 60954 - Trp CCA [ENA] ¡û
>W1710568835 FOTW01000036 Betaproteobacteria Rugamonas rubra [FOTW] 1130 1205 + Trp CCA [ENA] ¡û
>W1710581742 FPKH01000014 Betaproteobacteria Janthinobacterium lividum [FPKH] 783 858 + Trp CCA [ENA] ¡û
>W1710586024 FQWU01000007 Betaproteobacteria Massilia sp. CF038 [FQWU] 101469 101394 - Trp CCA [ENA] ¡û
>W1710596835 FTMV01000001 Betaproteobacteria Janthinobacterium sp. TND4EL3 [FTMV] 434800 434875 + Trp CCA [ENA] ¡û
>W1710720675 LFKP01000014 Betaproteobacteria Janthinobacterium lividum [LFKP] 333866 333791 - Trp CCA [ENA] ¡û
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

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