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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Groundwater metagenome 4000601.lucy.pga.C1
Anticodon = CCC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.783989 (9 seq.)
>W131231894
AUIV01000003
Gammaproteobacteria
Thermomonas fusca DSM 15424 [AUIV]
72991
73064
+
Gly
CCC
[ENA]
¡û
>W1711387216
MEGK01000016
Gammaproteobacteria
Rhodanobacter sp. SCN 66-43 [MEGK]
75897
75826
-
Gly
CCC
[ENA]
¡û
>W1711506649
MKWP01000002
Gammaproteobacteria
Xanthomonadales bacterium 66-474 [MKWP]
29328
29399
+
Gly
CCC
[ENA]
¡û
>WENV181166403
OEIU01000226
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
25321
25394
+
Gly
CCC
[ENA]
¢þ
>WENV181381167
OFRE01036140
[OFRE] wastewater metagenome; Exp Tend NO 50WW
280
207
-
Gly
CCC
[ENA]
¢þ
>WENV183749853
PPFU01222108
[PPFU] hypolithon metagenome; Antarctic Hypolithon
87
14
-
Gly
CCC
[ENA]
¢þ
>W1911162521
NPZB01000002
Gammaproteobacteria
Lysobacter silvestris AM20-91 [NPZB]
93396
93469
+
Gly
CCC
[ENA]
¡û
>W1810914460
QVPD01000002
Gammaproteobacteria
Luteimonas weifangensis WF-2 [QVPD]
345987
346060
+
Gly
CCC
[ENA]
¡û
>ENV09004010
ADIG01001039
Groundwater metagenome 4000601.lucy.pga.C1
229724
229797
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK