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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Groundwater metagenome 4000601.lucy.pga.C1
Anticodon = CCG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.299303 (34 seq.)
>W1710880576
LMSK01000002
Gammaproteobacteria
Rhodanobacter sp. Soil772 [LMSK]
663635
663559
-
Arg
CCG
[ENA]
¡û
>W1711147396
LVJP01003709
Gammaproteobacteria
Rhodanobacter denitrificans [LVJP]
10113
10037
-
Arg
CCG
[ENA]
¡û
>W1711147462
LVJQ01002813
Gammaproteobacteria
Rhodanobacter sp. FW104-R5 [LVJQ]
3
79
+
Arg
CCG
[ENA]
¡û
>W1711147516
LVJR01000120
Gammaproteobacteria
Rhodanobacter sp. FW104-R8 [LVJR]
38379
38455
+
Arg
CCG
[ENA]
¡û
>W1711147552
LVJS01000108
Gammaproteobacteria
Rhodanobacter thiooxydans [LVJS]
1404
1328
-
Arg
CCG
[ENA]
¡û
>W1711147573
LVJT01000017
Gammaproteobacteria
Rhodanobacter sp. FW510-T8 [LVJT]
242282
242358
+
Arg
CCG
[ENA]
¡û
>W1711147641
LVJU01000104
Gammaproteobacteria
Rhodanobacter sp. FW510-R10 [LVJU]
11940
11864
-
Arg
CCG
[ENA]
¡û
>W1711147662
LVJV01000746
Gammaproteobacteria
Rhodanobacter sp. FW510-R12 [LVJV]
2020
2096
+
Arg
CCG
[ENA]
¡û
>W1711147684
LVJV01001333
Gammaproteobacteria
Rhodanobacter sp. FW510-R12 [LVJV]
11928
11852
-
Arg
CCG
[ENA]
¡û
>W1711751351
MUNR01000010
Gammaproteobacteria
Rhodanobacter sp. C01 [MUNR]
107905
107829
-
Arg
CCG
[ENA]
¡û
>W1711751417
MUNT01000001
Gammaproteobacteria
Rhodanobacter sp. C03 [MUNT]
180687
180763
+
Arg
CCG
[ENA]
¡û
>W1711751533
MUNV01000012
Gammaproteobacteria
Rhodanobacter sp. B04 [MUNV]
152362
152286
-
Arg
CCG
[ENA]
¡û
>W131218938
ATYD01000012
Gammaproteobacteria
Rhodanobacter sp. OR444 [ATYD]
48084
48008
-
Arg
CCG
[ENA]
¡û
>W131219032
ATYF01000005
Gammaproteobacteria
Rhodanobacter sp. OR92 [ATYF]
151412
151488
+
Arg
CCG
[ENA]
¡û
>W141151871
AXBJ01000002
Gammaproteobacteria
Rhodanobacter sp. OR87 [AXBJ]
205458
205534
+
Arg
CCG
[ENA]
¡û
>WENV170706537
LNAP01004028
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
7392
7468
+
Arg
CCG
[ENA]
¢þ
>W1910841616
NADW01000021
Bacillota
Bacillus sp. SRB_336 [NADW]
232364
232288
-
Arg
CCG
[ENA]
¡û
>W1810514382
QBUW01000010
Gammaproteobacteria
Rhodanobacter thiooxydans CR1 [QBUW]
68690
68614
-
Arg
CCG
[ENA]
¡û
>W1810591941
QFWQ01000006
Gammaproteobacteria
Rhodanobacter denitrificans Yn1 [QFWQ]
109440
109516
+
Arg
CCG
[ENA]
¡û
>ENV09004058
ADIG01001785
Groundwater metagenome 4000601.lucy.pga.C1
329
405
+
Arg
CCG
[ENA]
¡û
>W11180911
AGIL01000014
Gammaproteobacteria
Rhodanobacter denitrificans 2APBS1 [AGIL]
116440
116516
+
Arg
CCG
[ENA]
¡û
>W121071351
AJXV01000049
Gammaproteobacteria
Rhodanobacter denitrificans 116-2 [AJXV]
18671
18747
+
Arg
CCG
[ENA]
¡û
>W121071406
AJXW01000097
Gammaproteobacteria
Rhodanobacter thiooxydans LCS2 [AJXW]
5116
5192
+
Arg
CCG
[ENA]
¡û
>C131003721
CP003470
Gammaproteobacteria
Rhodanobacter denitrificans 2APBS1 [CP003470]
3856948
3856872
-
Arg
CCG
-
¡û
>W1610742922
LMSK01000002
Gammaproteobacteria
Rhodanobacter sp. Soil772 [LMSK]
663635
663559
-
Arg
CCG
[ENA]
¡û
>W1610958349
LVJP01003709
Gammaproteobacteria
Rhodanobacter denitrificans [LVJP]
10113
10037
-
Arg
CCG
[ENA]
¡û
>W1610958415
LVJQ01002813
Gammaproteobacteria
Rhodanobacter sp. FW104-R5 [LVJQ]
3
79
+
Arg
CCG
[ENA]
¡û
>W1610958469
LVJR01000120
Gammaproteobacteria
Rhodanobacter sp. FW104-R8 [LVJR]
38379
38455
+
Arg
CCG
[ENA]
¡û
>W1610958505
LVJS01000108
Gammaproteobacteria
Rhodanobacter thiooxydans [LVJS]
1404
1328
-
Arg
CCG
[ENA]
¡û
>W1610958526
LVJT01000017
Gammaproteobacteria
Rhodanobacter sp. FW510-T8 [LVJT]
242282
242358
+
Arg
CCG
[ENA]
¡û
>W1610958594
LVJU01000104
Gammaproteobacteria
Rhodanobacter sp. FW510-R10 [LVJU]
11940
11864
-
Arg
CCG
[ENA]
¡û
>W1610958615
LVJV01000746
Gammaproteobacteria
Rhodanobacter sp. FW510-R12 [LVJV]
2020
2096
+
Arg
CCG
[ENA]
¡û
>W1610958637
LVJV01001333
Gammaproteobacteria
Rhodanobacter sp. FW510-R12 [LVJV]
11928
11852
-
Arg
CCG
[ENA]
¡û
>W1710592200
FRCH01000001
Gammaproteobacteria
Rhodanobacter sp. OK091 [FRCH]
1588134
1588058
-
Arg
CCG
[ENA]
¡û
Identical group No.375068 (2 seq.)
>WENV180099428
NMRC01003623
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
3924
4000
+
Arg
CCG
[ENA]
¢þ
>ENV09004049
ADIG01001062
Groundwater metagenome 4000601.lucy.pga.C1
252982
253058
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK