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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Groundwater metagenome 4000601.lucy.pga.C1
Anticodon = CGA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.34854 (10 seq.)
>W131167182
ARDB01000042
Betaproteobacteria
Trinickia symbiotica JPY347 [ARDB]
50777
50867
+
Ser
CGA
[ENA]
¡û
>W131174778
ARIS01000075
Betaproteobacteria
Thiomonas sp. FB-6 [ARIS]
59960
59870
-
Ser
CGA
[ENA]
¡û
>WENV170961760
MLJW01001019
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
5963
6053
+
Ser
CGA
[ENA]
¢þ
>W1810200796
PNYA01000012
Betaproteobacteria
Trinickia dabaoshanensis GIMN1.004 [PNYA]
58473
58563
+
Ser
CGA
[ENA]
¡û
>W1810200887
PNYC01000005
Betaproteobacteria
Trinickia symbiotica JPY 581 [PNYC]
252333
252423
+
Ser
CGA
[ENA]
¡û
>W1810295676
PTIR01000015
Betaproteobacteria
Trinickia symbiotica JPY-345 [PTIR]
95423
95333
-
Ser
CGA
[ENA]
¡û
>W1810423895
PYUC01000005
Betaproteobacteria
Trinickia symbiotica JPY-366 [PYUC]
239512
239422
-
Ser
CGA
[ENA]
¡û
>W1810789204
QRGA01000018
Betaproteobacteria
Trinickia dinghuensis DHOM06 [QRGA]
155445
155355
-
Ser
CGA
[ENA]
¡û
>W1810870328
QUBS01000018
Betaproteobacteria
Trinickia diaoshuihuensis NEAU-SY24 [QUBS]
157381
157291
-
Ser
CGA
[ENA]
¡û
>ENV09004059
ADIG01001839
Groundwater metagenome 4000601.lucy.pga.C1
1313
1223
-
Ser
CGA
[ENA]
¡û
Identical group No.39912 (1 seq.)
>ENV09004022
ADIG01001044
Groundwater metagenome 4000601.lucy.pga.C1
179151
179241
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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