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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Groundwater metagenome 4000601.lucy.pga.C1
Anticodon = CTC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.539431 (5 seq.)
>W1711751301
MUNQ01000012
Gammaproteobacteria
Rhodanobacter sp. C05 [MUNQ]
96230
96305
+
Glu
CTC
[ENA]
¡û
>W1711751497
MUNU01000015
Gammaproteobacteria
Rhodanobacter sp. B05 [MUNU]
259414
259339
-
Glu
CTC
[ENA]
¡û
>WENV180036178
FTLB01542251
[FTLB] metagenome; soil
78
3
-
Glu
CTC
[ENA]
¢þ
>WENV170706515
LNAP01003795
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
13278
13203
-
Glu
CTC
[ENA]
¢þ
>ENV09004043
ADIG01001059
Groundwater metagenome 4000601.lucy.pga.C1
24143
24218
+
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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